FC876353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURPS (Diaminopimelate epimerase OS=Burkholderia pseudomallei GN=dapF PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15 Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HG GNDF+++D P +T Q L DR+FGIGAD ++ V+ D+ RIFN DG E E CGNG RCF +F+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURP6 (Diaminopimelate epimerase OS=Burkholderia pseudomallei (strain 668) GN=dapF PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15 Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HG GNDF+++D P +T Q L DR+FGIGAD ++ V+ D+ RIFN DG E E CGNG RCF +F+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURP0 (Diaminopimelate epimerase OS=Burkholderia pseudomallei (strain 1106a) GN=dapF PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15 Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HG GNDF+++D P +T Q L DR+FGIGAD ++ V+ D+ RIFN DG E E CGNG RCF +F+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURMS (Diaminopimelate epimerase OS=Burkholderia mallei (strain SAVP1) GN=dapF PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15 Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HG GNDF+++D P +T Q L DR+FGIGAD ++ V+ D+ RIFN DG E E CGNG RCF +F+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURMA (Diaminopimelate epimerase OS=Burkholderia mallei GN=dapF PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15 Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HG GNDF+++D P +T Q L DR+FGIGAD ++ V+ D+ RIFN DG E E CGNG RCF +F+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURM9 (Diaminopimelate epimerase OS=Burkholderia mallei (strain NCTC 10229) GN=dapF PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15 Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HG GNDF+++D P +T Q L DR+FGIGAD ++ V+ D+ RIFN DG E E CGNG RCF +F+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURM7 (Diaminopimelate epimerase OS=Burkholderia mallei (strain NCTC 10247) GN=dapF PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15 Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HG GNDF+++D P +T Q L DR+FGIGAD ++ V+ D+ RIFN DG E E CGNG RCF +F+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPF (Diaminopimelate epimerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dapF PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.351e-15 Identity = 44/85 (51.76%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF+++D S I P+ A+ DR+ GIG D ++ N D D+ RIFNSDGSE E CGNG RCFARF+ Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKMWGDRHTGIGFDQLLIVEAPSNPDVDFRYRIFNSDGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEHT (Diaminopimelate epimerase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dapF PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.351e-15 Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 ++F K HGLGNDF+++DN ++ +Q KL DR+FGIG D ++ + D D+ RIFN+DG+E E CGNG RCFARF+ Sbjct: 3 VNFSKMHGLGNDFVVIDNITQNV-FLSRDQIIKLADRHFGIGFDQLLMVEAPYSPDLDFHYRIFNADGTEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURCM (Diaminopimelate epimerase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dapF PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.765e-15 Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666 L F K HG GNDF+++D + P +T Q L +R+FGIGAD ++ V+ D+ RIFN DG E E CGNG RCF +F++ Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVS 88 The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 275
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bpback to top |