FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:5..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURPS (Diaminopimelate epimerase OS=Burkholderia pseudomallei GN=dapF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HG GNDF+++D      P +T  Q   L DR+FGIGAD ++      V+  D+  RIFN DG E E CGNG RCF +F+
Sbjct:    3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURP6 (Diaminopimelate epimerase OS=Burkholderia pseudomallei (strain 668) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HG GNDF+++D      P +T  Q   L DR+FGIGAD ++      V+  D+  RIFN DG E E CGNG RCF +F+
Sbjct:    3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURP0 (Diaminopimelate epimerase OS=Burkholderia pseudomallei (strain 1106a) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HG GNDF+++D      P +T  Q   L DR+FGIGAD ++      V+  D+  RIFN DG E E CGNG RCF +F+
Sbjct:    3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURMS (Diaminopimelate epimerase OS=Burkholderia mallei (strain SAVP1) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HG GNDF+++D      P +T  Q   L DR+FGIGAD ++      V+  D+  RIFN DG E E CGNG RCF +F+
Sbjct:    3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURMA (Diaminopimelate epimerase OS=Burkholderia mallei GN=dapF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HG GNDF+++D      P +T  Q   L DR+FGIGAD ++      V+  D+  RIFN DG E E CGNG RCF +F+
Sbjct:    3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURM9 (Diaminopimelate epimerase OS=Burkholderia mallei (strain NCTC 10229) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HG GNDF+++D      P +T  Q   L DR+FGIGAD ++      V+  D+  RIFN DG E E CGNG RCF +F+
Sbjct:    3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURM7 (Diaminopimelate epimerase OS=Burkholderia mallei (strain NCTC 10247) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HG GNDF+++D      P +T  Q   L DR+FGIGAD ++      V+  D+  RIFN DG E E CGNG RCF +F+
Sbjct:    3 LSFTKMHGAGNDFVVLDGYTRALPPLTGAQVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPF (Diaminopimelate epimerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.351e-15
Identity = 44/85 (51.76%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF+++D   S    I P+ A+   DR+ GIG D ++      N D D+  RIFNSDGSE E CGNG RCFARF+
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKMWGDRHTGIGFDQLLIVEAPSNPDVDFRYRIFNSDGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEHT (Diaminopimelate epimerase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.351e-15
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            ++F K HGLGNDF+++DN       ++ +Q  KL DR+FGIG D ++      + D D+  RIFN+DG+E E CGNG RCFARF+
Sbjct:    3 VNFSKMHGLGNDFVVIDNITQNV-FLSRDQIIKLADRHFGIGFDQLLMVEAPYSPDLDFHYRIFNADGTEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURCM (Diaminopimelate epimerase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.765e-15
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFIA 666
            L F K HG GNDF+++D  +   P +T  Q   L +R+FGIGAD ++      V+  D+  RIFN DG E E CGNG RCF +F++
Sbjct:    3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVS 88          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_BURPS1.035e-1547.06Diaminopimelate epimerase OS=Burkholderia pseudoma... [more]
DAPF_BURP61.035e-1547.06Diaminopimelate epimerase OS=Burkholderia pseudoma... [more]
DAPF_BURP01.035e-1547.06Diaminopimelate epimerase OS=Burkholderia pseudoma... [more]
DAPF_BURMS1.035e-1547.06Diaminopimelate epimerase OS=Burkholderia mallei (... [more]
DAPF_BURMA1.035e-1547.06Diaminopimelate epimerase OS=Burkholderia mallei G... [more]
DAPF_BURM91.035e-1547.06Diaminopimelate epimerase OS=Burkholderia mallei (... [more]
DAPF_BURM71.035e-1547.06Diaminopimelate epimerase OS=Burkholderia mallei (... [more]
DAPF_PSEPF1.351e-1551.76Diaminopimelate epimerase OS=Pseudomonas fluoresce... [more]
DAPF_PSEHT1.351e-1548.24Diaminopimelate epimerase OS=Pseudoalteromonas hal... [more]
DAPF_BURCM1.765e-1545.35Diaminopimelate epimerase OS=Burkholderia ambifari... [more]

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Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
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