FC876354

Overview
NameFC876354
Unique NameFC876354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_YERPE (Chaperone protein htpG OS=Yersinia pestis GN=htpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.310e-22
Identity = 59/116 (50.86%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRD 336
            DKEK+ L++ D GIGMT++++I NLGTIAKSGT AF+E +    + D  LIGQFGVGFYS ++VAD V V ++      D    WES  +G + I++ T +E   RGTEI LHLR+
Sbjct:   70 DKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGAPADTGVFWESAGEGDYTIADITKDE---RGTEITLHLRE 182          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_YERPA (Chaperone protein htpG OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=htpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.310e-22
Identity = 59/116 (50.86%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRD 336
            DKEK+ L++ D GIGMT++++I NLGTIAKSGT AF+E +    + D  LIGQFGVGFYS ++VAD V V ++      D    WES  +G + I++ T +E   RGTEI LHLR+
Sbjct:   72 DKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGAPADTGVFWESAGEGDYTIADITKDE---RGTEITLHLRE 184          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_SHESR (Chaperone protein htpG OS=Shewanella sp. (strain MR-7) GN=htpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.310e-22
Identity = 59/145 (40.69%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISK---HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 423
            DKEK  ++I D G+GMT++ +I++LGTIAKSGT+ F + +  + S D  LIGQFGVGFYS ++VA  V V ++   H  ++  +WES+ +G+F +   T      RGTEI LHLRDE                    I+ P+ +W
Sbjct:   70 DKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTAEFFKNLSGEASKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKANEAVLWESEGEGSFTVDTIT---KASRGTEITLHLRDEEKEFADEWRLRSIITKYSDHISVPVEMW 211          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_SHESM (Chaperone protein htpG OS=Shewanella sp. (strain MR-4) GN=htpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.310e-22
Identity = 59/145 (40.69%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISK---HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 423
            DKEK  ++I D G+GMT++ +I++LGTIAKSGT+ F + +  + S D  LIGQFGVGFYS ++VA  V V ++   H  ++  +WES+ +G+F +   T      RGTEI LHLRDE                    I+ P+ +W
Sbjct:   70 DKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTAEFFKNLSGEASKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKANEAVLWESEGEGSFTVDTIT---KASRGTEITLHLRDEEKEFADEWRLRSIITKYSDHISVPVEMW 211          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_SHESA (Chaperone protein htpG OS=Shewanella sp. (strain ANA-3) GN=htpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.310e-22
Identity = 59/145 (40.69%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISK---HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 423
            DKEK  ++I D G+GMT++ +I++LGTIAKSGT+ F + +  + S D  LIGQFGVGFYS ++VA  V V ++   H  ++  +WES+ +G+F +   T      RGTEI LHLRDE                    I+ P+ +W
Sbjct:   70 DKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTAEFFKNLSGEASKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKANEAVLWESEGEGSFTVDTIT---KASRGTEITLHLRDEEKEFADEWRLRSIITKYSDHISVPVEMW 211          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_SHEHH (Chaperone protein htpG OS=Shewanella halifaxensis (strain HAW-EB4) GN=htpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.310e-22
Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISK---HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            DKEK  ++I D GIGMT++ +I++LGTIAKSGT+ F + M    S D  LIGQFGVGFYS ++VAD V V ++   H+ D+  +WES  +G F +   T      RGTEI LHLRD+
Sbjct:   70 DKEKGTVTIEDNGIGMTRDGVIEHLGTIAKSGTAEFFKNMSGDESKDSQLIGQFGVGFYSSFIVADRVTVRTRAAGHSADEAVLWESAGEGDFTVETIT---KQSRGTEITLHLRDD 183          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_SHEFN (Chaperone protein htpG OS=Shewanella frigidimarina (strain NCIMB 400) GN=htpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.310e-22
Identity = 61/145 (42.07%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISK---HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 423
            +KEK  ++I D GIGMT++ +I++LGTIAKSGT  F   +  + S D  LIGQFGVGFYS ++VA  V V ++   H  ++  +WES+ +G+F +   T NE   RGTEI LHLRDE                    I+ P+ +W
Sbjct:   70 NKEKGTVTISDNGIGMTRDSVIEHLGTIAKSGTKEFFSNLSGEASKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHAANEGVLWESEGEGSFNVESITKNE---RGTEIVLHLRDEETEFADDYRLRSIITKYSDHISVPVQMW 211          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_RHIME (Chaperone protein htpG OS=Rhizobium meliloti GN=htpG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.710e-22
Identity = 56/118 (47.46%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM---QTSGDLNLIGQFGVGFYSVYLVADYVEVISKH-NDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEA 342
            LD+E   L I D GIGM +++L+++LGTIA+SGT AF+E++   Q      LIGQFGVGFYS ++VAD V+V+S+    DK + W S   G++ +S     +   RGT I LHL DEA
Sbjct:   73 LDEENARLVIEDNGIGMGRDELVESLGTIARSGTRAFMERIEAAQNKDGAQLIGQFGVGFYSAFMVADNVDVVSRRAGTDKAWHWASDGKGSYTVSAVDLADAPARGTRITLHLMDEA 190          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_SALTY (Chaperone protein htpG OS=Salmonella typhimurium GN=htpG PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.234e-22
Identity = 56/116 (48.28%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQ---YVWESKADGAFAISEDTWNEPLGRGTEIKLHLRD 336
            DK+K+ L+I D G+GM ++++I +LGTIAKSGT +F+E M    + D  LIGQFGVGFYS ++VAD V V ++   DK      WES  +G + +++ T N+   RGTEI LHLR+
Sbjct:   70 DKDKRTLTIADNGVGMNRDEVIDHLGTIAKSGTKSFLESMGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGDKPENGVFWESAGEGEYTVADITKND---RGTEITLHLRE 182          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_SALTI (Chaperone protein htpG OS=Salmonella typhi GN=htpG PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.234e-22
Identity = 56/116 (48.28%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQ---YVWESKADGAFAISEDTWNEPLGRGTEIKLHLRD 336
            DK+K+ L+I D G+GM ++++I +LGTIAKSGT +F+E M    + D  LIGQFGVGFYS ++VAD V V ++   DK      WES  +G + +++ T N+   RGTEI LHLR+
Sbjct:   70 DKDKRTLTIADNGVGMNRDEVIDHLGTIAKSGTKSFLESMGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGDKPENGVFWESAGEGEYTVADITKND---RGTEITLHLRE 182          
The following BLAST results are available for this feature:
BLAST of FC876354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
HTPG_YERPE1.310e-2250.86Chaperone protein htpG OS=Yersinia pestis GN=htpG ... [more]
HTPG_YERPA1.310e-2250.86Chaperone protein htpG OS=Yersinia pestis bv. Anti... [more]
HTPG_SHESR1.310e-2240.69Chaperone protein htpG OS=Shewanella sp. (strain M... [more]
HTPG_SHESM1.310e-2240.69Chaperone protein htpG OS=Shewanella sp. (strain M... [more]
HTPG_SHESA1.310e-2240.69Chaperone protein htpG OS=Shewanella sp. (strain A... [more]
HTPG_SHEHH1.310e-2250.43Chaperone protein htpG OS=Shewanella halifaxensis ... [more]
HTPG_SHEFN1.310e-2242.07Chaperone protein htpG OS=Shewanella frigidimarina... [more]
HTPG_RHIME1.710e-2247.46Chaperone protein htpG OS=Rhizobium meliloti GN=ht... [more]
HTPG_SALTY2.234e-2248.28Chaperone protein htpG OS=Salmonella typhimurium G... [more]
HTPG_SALTI2.234e-2248.28Chaperone protein htpG OS=Salmonella typhi GN=htpG... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003G08EF DevOvary1 Citrus clementina cDNA clone C32003G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876354 ID=FC876354; Name=FC876354; organism=Citrus clementina; type=EST; length=490bp
CTAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTAT
GACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAA
CATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATT
GGGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGTTGCTGACTATGT
TGAAGTCATTAGCAAACATAATGATGACAAACAGTATGTATGGGAATCAA
AGGCTGATGGAGCATTTGCAATTTCTGAGGACACATGGAATGAGCCACTA
GGACGAGGAACCGAGATTAAATTGCACCTCAGAGATGAAGCTGGGGAGTA
CTTGGAAGAGAGCAAGTTGAAGGAGTTGGTGAAGAAATATTCTGAATTTA
TCAACTTCCCCATCTATATCTGGGCCAGCAAAGAGGTTGATGTGGATGTT
CCTGCTGACGAGGATGACTCAAGTGATGAAGAGGAGAAAG
back to top