FC876354

Overview
NameFC876354
Unique NameFC876354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_MYXXD (Chaperone protein htpG OS=Myxococcus xanthus (strain DK 1622) GN=htpG PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.918e-22
Identity = 61/148 (41.22%), Postives = 83/148 (56.08%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSG---DLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQ--YVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIWASK 432
            D+ K  L+I D GIGM+ ++L+KNLGTIA SG+  F+E +   G   D+ LIGQFGVGFYS YLVAD VEV+S+     Q  + W S+A G+F +      E   RGT I LHL+++                   ++  PI +  SK
Sbjct:   75 DEAKGTLTIEDTGIGMSHDELVKNLGTIAHSGSREFIEALAQKGQQKDMQLIGQFGVGFYSAYLVADRVEVVSRAAGQGQSAWRWTSEAKGSFTVEP---AERAARGTSITLHLKEDQKEFLGEWRLRSLITQYSDYVGHPIKLQVSK 219          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_METRJ (Chaperone protein htpG OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=htpG PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.918e-22
Identity = 61/143 (42.66%), Postives = 81/143 (56.64%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF---VEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKH-NDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYI 420
            DKE + L++ D GIGMTKEDL  NLGTIA+SGT AF   +E  +     +LIGQFGVGFYS ++VAD V V S+    D+ + W S+  G++ +   T  EP   GT+I LHL+ +A                  FI  PI +
Sbjct:   70 DKEARTLTVSDAGIGMTKEDLATNLGTIARSGTRAFSQTLESAKAEDRPSLIGQFGVGFYSAFMVADRVTVTSRRAGSDEAWTWASEGQGSYTLEPATRAEP---GTDIVLHLKADADEYLEPYRLDHLVRKWADFITVPIAV 209          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_CITK8 (Chaperone protein htpG OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=htpG PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.918e-22
Identity = 56/116 (48.28%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQ---YVWESKADGAFAISEDTWNEPLGRGTEIKLHLRD 336
            DK+K+ L+I D G+GM ++D+I +LGTIAKSGT +F+E M    + D  LIGQFGVGFYS ++VAD V V ++   DK      WES  +G + +++ T ++   RGTEI LHLR+
Sbjct:   70 DKDKRTLTIADNGVGMNRDDVIDHLGTIAKSGTKSFLESMGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGDKPENGVFWESAGEGEYTVADITKDD---RGTEITLHLRE 182          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_SODGM (Chaperone protein htpG OS=Sodalis glossinidius (strain morsitans) GN=htpG PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 3.810e-22
Identity = 60/116 (51.72%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISK---HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRD 336
            DKEK+ L+  D GIGM +E++I NLGTIAKSGT AF+E M +    D  LIGQFGVGFYS ++VAD V V ++      D    WES  +G + I++ T  E   RGTEI LHLR+
Sbjct:   70 DKEKRTLTFSDNGIGMRREEVIDNLGTIAKSGTKAFLESMGSDQLKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGAKPDGGVFWESAGEGDYTIADITKPE---RGTEITLHLRE 182          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_SHEON (Chaperone protein htpG OS=Shewanella oneidensis GN=htpG PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.810e-22
Identity = 58/145 (40.00%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISK---HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 423
            DKEK  ++I D G+GMT++ +I++LGTIAKSGT+ F + +  + S D  LIGQFGVGFYS ++VA  V V ++   H  ++  +WES+ +G+F +   T      RGTEI LHLRD+                    I+ P+ +W
Sbjct:   70 DKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTAEFFKNLSGEASKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKANEAVLWESEGEGSFTVETIT---KATRGTEITLHLRDDEKEFADDWRLRSIITKYSDHISIPVEMW 211          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_PSEHT (Chaperone protein htpG OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.810e-22
Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEV-ISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            DKE   ++I D GIGMT++++I +LGTIAKSGT+ F + +    S D  LIGQFGVGFYS ++VAD V V   K  +   Y WES+ +G + + E    E  GRGT+I LHLR+E
Sbjct:   72 DKEANTITISDNGIGMTRDEVISSLGTIAKSGTAEFFKNLTGDQSKDSQLIGQFGVGFYSAFIVADLVTVRTRKAGETTAYEWESQGEGEYTLQE---IEKEGRGTDIILHLREE 183          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_YERE8 (Chaperone protein htpG OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.977e-22
Identity = 58/116 (50.00%), Postives = 78/116 (67.24%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRD 336
            DKEK+ L++ D GIGM++E++I NLGTIAKSGT AF+E +    + D  LIGQFGVGFYS ++VAD V V ++      D    WES  +G + I++ T  +   RGTEI LHLR+
Sbjct:   72 DKEKRTLTLSDNGIGMSREEVIDNLGTIAKSGTKAFLESIGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGAPADAGVFWESAGEGDYTIADITKED---RGTEITLHLRE 184          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_HELPY (Chaperone protein htpG OS=Helicobacter pylori GN=htpG PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.977e-22
Identity = 63/142 (44.37%), Postives = 80/142 (56.34%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKH-NDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYI 420
            D +KK L+I+D GIGM K DLI++LGTIAKSGT  F+  +      D  LIGQFGVGFYS ++VA  + V +K  N D+ Y W S   G F ISE   +E   +GTEI L L+DE                    I FPI++
Sbjct:   69 DSQKKTLTIKDNGIGMDKNDLIEHLGTIAKSGTKNFLSALSGDKKKDSALIGQFGVGFYSAFMVASKIVVQTKKVNSDQAYAWVSDGKGKFEISECVKDE---QGTEITLFLKDEDSHFASRWEIDSVVKKYSEHIPFPIFL 207          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_ENTS8 (Chaperone protein htpG OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.977e-22
Identity = 56/116 (48.28%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKH---NDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRD 336
            DK+K+ L+I D GIGMT++++I +LGTIAKSGT AF+E M    + D  LIGQFGVGFYS ++VAD V V ++    + D+   WES+ +G + +++ +      RGTEI LHLR+
Sbjct:   70 DKDKRTLTIADNGIGMTRDEVIDHLGTIAKSGTKAFLESMGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGVSADEAVFWESEGEGEYTVADIS---KADRGTEITLHLRE 182          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_ROSDO (Chaperone protein htpG OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.500e-22
Identity = 57/141 (40.43%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    1 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE--KMQTSGDLNLIGQFGVGFYSVYLVADYVEVIS-KHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPI 414
            +DK+ K LS+ D GIGM   DL+  LGTIA+SGT AF++  K +  GD+ LIGQFGVGFYS ++VA+ V+V++ K  +D+ ++W S   G F+I      E    GT + LHL+ +A                   I+FP+
Sbjct:   72 VDKKAKTLSVSDNGIGMNHGDLLDTLGTIARSGTGAFLDALKSEEKGDIGLIGQFGVGFYSAFMVAERVDVLTRKAGEDESWLWSSDGKGEFSIEP---GERAQSGTTVTLHLKKDAKEFLEESRIRHIIKTYSEHISFPV 209          
The following BLAST results are available for this feature:
BLAST of FC876354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
HTPG_MYXXD2.918e-2241.22Chaperone protein htpG OS=Myxococcus xanthus (stra... [more]
HTPG_METRJ2.918e-2242.66Chaperone protein htpG OS=Methylobacterium radioto... [more]
HTPG_CITK82.918e-2248.28Chaperone protein htpG OS=Citrobacter koseri (stra... [more]
HTPG_SODGM3.810e-2251.72Chaperone protein htpG OS=Sodalis glossinidius (st... [more]
HTPG_SHEON3.810e-2240.00Chaperone protein htpG OS=Shewanella oneidensis GN... [more]
HTPG_PSEHT3.810e-2249.57Chaperone protein htpG OS=Pseudoalteromonas halopl... [more]
HTPG_YERE84.977e-2250.00Chaperone protein htpG OS=Yersinia enterocolitica ... [more]
HTPG_HELPY4.977e-2244.37Chaperone protein htpG OS=Helicobacter pylori GN=h... [more]
HTPG_ENTS84.977e-2248.28Chaperone protein htpG OS=Enterobacter sakazakii (... [more]
HTPG_ROSDO6.500e-2240.43Chaperone protein htpG OS=Roseobacter denitrifican... [more]

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Properties
Property NameValue
Genbank descriptionC32003G08EF DevOvary1 Citrus clementina cDNA clone C32003G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876354 ID=FC876354; Name=FC876354; organism=Citrus clementina; type=EST; length=490bp
CTAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTAT
GACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAA
CATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATT
GGGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGTTGCTGACTATGT
TGAAGTCATTAGCAAACATAATGATGACAAACAGTATGTATGGGAATCAA
AGGCTGATGGAGCATTTGCAATTTCTGAGGACACATGGAATGAGCCACTA
GGACGAGGAACCGAGATTAAATTGCACCTCAGAGATGAAGCTGGGGAGTA
CTTGGAAGAGAGCAAGTTGAAGGAGTTGGTGAAGAAATATTCTGAATTTA
TCAACTTCCCCATCTATATCTGGGCCAGCAAAGAGGTTGATGTGGATGTT
CCTGCTGACGAGGATGACTCAAGTGATGAAGAGGAGAAAG
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