FC876354

Overview
NameFC876354
Unique NameFC876354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15423 contig Ccv1_Contig15423:542..1031. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_RHORT (Chaperone protein htpG OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=htpG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.387e-24
Identity = 60/120 (50.00%), Postives = 82/120 (68.33%), Query Frame = 1
Query:    1 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQ-----TSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQ-YVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEA 342
            +D E   L+I D GIGM + +LI+NLGTIA+SGT AF E ++      SGD++LIGQFGVGFYS ++VAD VEV+++   + Q + W S   G+F++SE    E  GRG  I LHLR++A
Sbjct:   68 IDAEAGTLTIADNGIGMNRHELIENLGTIARSGTQAFAEALKAKSQAASGDVSLIGQFGVGFYSAFMVADKVEVVTRRAGEAQGWRWSSDGKGSFSVSE---VEGAGRGAAITLHLREDA 184          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_NEOSM (Chaperone protein htpG OS=Neorickettsia sennetsu (strain Miyayama) GN=htpG PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.117e-24
Identity = 61/141 (43.26%), Postives = 88/141 (62.41%), Query Frame = 1
Query:    1 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEV-ISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYI 420
            L+KEKKIL I D GIGM +++L++NLGT+A+SGT  F+E ++    ++LIGQFGVGFYSV++VAD VEV   K    K Y+W S+   +F +  D   E + RGT+I+++L+D +                   I FPIY+
Sbjct:   72 LNKEKKILEISDNGIGMDEKELVENLGTVARSGTEKFLESLKDK-KVDLIGQFGVGFYSVFMVADKVEVETRKAGTKKGYIWGSRGRDSFYV--DELGESVSRGTKIRIYLKDNSEEFLDKFKLEHVVVTNSNHIAFPIYL 209          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_RICBR (Chaperone protein htpG OS=Rickettsia bellii (strain RML369-C) GN=htpG PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.069e-24
Identity = 60/115 (52.17%), Postives = 78/115 (67.83%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVIS-KHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            DK    + IRD GIGM KEDLI+NLGTIA+SGT+ F++ +   +  D  LIGQFGVGFYS ++VAD V V S K  +DK YVWES+ +G + +S    +    RGTEI LH++ E
Sbjct:   69 DKNNGQVIIRDNGIGMNKEDLIENLGTIARSGTANFLKNLSGDSKKDNMLIGQFGVGFYSSFMVADKVTVTSRKAGEDKVYVWESEGEGEYIVSSS--DREFSRGTEIALHIKKE 181          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_RICB8 (Chaperone protein htpG OS=Rickettsia bellii (strain OSU 85-389) GN=htpG PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.069e-24
Identity = 60/115 (52.17%), Postives = 78/115 (67.83%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVIS-KHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            DK    + IRD GIGM KEDLI+NLGTIA+SGT+ F++ +   +  D  LIGQFGVGFYS ++VAD V V S K  +DK YVWES+ +G + +S    +    RGTEI LH++ E
Sbjct:   69 DKNNGQVIIRDNGIGMNKEDLIENLGTIARSGTANFLKNLSGDSKKDNMLIGQFGVGFYSSFMVADKVTVTSRKAGEDKVYVWESEGEGEYIVSNS--DREFSRGTEIALHIKKE 181          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HS904_HUMAN (Putative heat shock protein HSP 90-alpha A4 OS=Homo sapiens GN=HSP90AA4P PE=5 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.547e-23
Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAF 267
            +K+ + L+I D GIGMTK DLI NLGTI KS T  F+E +Q   D+++IGQF VGFYS Y VA+ V VI+KHN+D+QY WES   G+F
Sbjct:   23 NKQDRTLTIVDTGIGMTKADLINNLGTITKSETKVFMEVLQAGADISMIGQFSVGFYSAYSVAEKVTVITKHNNDEQYAWESSLRGSF 110          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_RICFE (Chaperone protein htpG OS=Rickettsia felis GN=htpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.639e-23
Identity = 60/116 (51.72%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVIS-KHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            +DK+K  + IRD GIGM K+DLI+NLGTIA+SGT+ F++ +   +  D  LIGQFGVGFYS ++VAD V V S K  +DK +VWES   G + +SE   ++   RGTEI LH++ E
Sbjct:   68 VDKDKGQIIIRDNGIGMNKDDLIENLGTIARSGTANFLKSLSGDSKKDNMLIGQFGVGFYSSFMVADKVTVTSRKAGEDKVHVWESDGLGEYIVSES--DKEFTRGTEIVLHIKKE 181          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_ORITB (Chaperone protein htpG OS=Orientia tsutsugamushi (strain Boryong) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.501e-23
Identity = 63/142 (44.37%), Postives = 82/142 (57.75%), Query Frame = 1
Query:    1 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQ-YVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIY 417
            +DKEK+ + ++D GIGM KEDL +NLGTIA SGT  F+E++      D  LIGQFGVGFYS Y+VAD V+VISK   + Q Y W SK +G + I +        RGT+I LH++ E                    I+ PIY
Sbjct:   68 MDKEKRYIILQDNGIGMNKEDLTQNLGTIASSGTQKFLEQLGNDAKKDNMLIGQFGVGFYSSYMVADEVKVISKKAGEAQAYQWSSKGEGEYYIED--CEADFIRGTKITLHIKPEYDNYLDHFQIKDIIKTYSDHISVPIY 207          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_ERWCT (Chaperone protein htpG OS=Erwinia carotovora subsp. atroseptica GN=htpG PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 4.501e-23
Identity = 59/116 (50.86%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISK---HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRD 336
            DKEK+ L+I D GIGM+++++I NLGTIAKSGT +F+E M +    D  LIGQFGVGFYS ++VAD V V ++    N D+   WES  +G + I++ T ++   RGTEI LHLR+
Sbjct:   70 DKEKRTLTISDNGIGMSRDEVIDNLGTIAKSGTKSFLESMGSDQVKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGANADQGVYWESAGEGDYTIADITKDD---RGTEITLHLRE 182          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_SULDN (Chaperone protein htpG OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=htpG PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.879e-23
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQ-YVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            DKE K L+I+D GIGM +EDL+ NLGTIAKSGT AF+E +      D +LIGQFGVGFY+ ++VA  VEV +K    +Q Y+W SK DG F I + T       GT I +HL D+
Sbjct:   67 DKEAKTLTIKDSGIGMNEEDLMNNLGTIAKSGTKAFLENLSGDQKKDSHLIGQFGVGFYASFMVAHKVEVTTKKAATEQAYLWISKGDGEFEIEKTTRE---SHGTTIVMHLNDD 178          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HSP82_ENCCU (Heat shock protein 90 OS=Encephalitozoon cuniculi GN=HSP90 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.879e-23
Identity = 58/147 (39.46%), Postives = 84/147 (57.14%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDL----NLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIWASK 432
            +K+ + L+I+D GIGMTK DL+  +GTIA SGT  F E+M+  G+     NLIGQFG+GFYS YLVA+ V++I+KH  D+  VW S     + I E+   EP   GT + L++++                    F+ +PIY +  K
Sbjct:   87 NKDNRTLTIKDNGIGMTKPDLMNFIGTIASSGTKKFREEMKEKGNSADASNLIGQFGLGFYSSYLVAERVDLITKHPSDEALVWTSTGRDVYTI-EEYDGEPFAHGTSLVLYIKEGEEEFLDPKRISEIVKKYSLFVFYPIYTYVEK 232          
The following BLAST results are available for this feature:
BLAST of FC876354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
HTPG_RHORT2.387e-2450.00Chaperone protein htpG OS=Rhodospirillum rubrum (s... [more]
HTPG_NEOSM3.117e-2443.26Chaperone protein htpG OS=Neorickettsia sennetsu (... [more]
HTPG_RICBR9.069e-2452.17Chaperone protein htpG OS=Rickettsia bellii (strai... [more]
HTPG_RICB89.069e-2452.17Chaperone protein htpG OS=Rickettsia bellii (strai... [more]
HS904_HUMAN1.547e-2357.95Putative heat shock protein HSP 90-alpha A4 OS=Hom... [more]
HTPG_RICFE2.639e-2351.72Chaperone protein htpG OS=Rickettsia felis GN=htpG... [more]
HTPG_ORITB4.501e-2344.37Chaperone protein htpG OS=Orientia tsutsugamushi (... [more]
HTPG_ERWCT4.501e-2350.86Chaperone protein htpG OS=Erwinia carotovora subsp... [more]
HTPG_SULDN5.879e-2352.17Chaperone protein htpG OS=Sulfurimonas denitrifica... [more]
HSP82_ENCCU5.879e-2339.46Heat shock protein 90 OS=Encephalitozoon cuniculi ... [more]

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Properties
Property NameValue
Genbank descriptionC32003G08EF DevOvary1 Citrus clementina cDNA clone C32003G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876354 ID=FC876354; Name=FC876354; organism=Citrus clementina; type=EST; length=490bp
CTAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTAT
GACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAA
CATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATT
GGGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGTTGCTGACTATGT
TGAAGTCATTAGCAAACATAATGATGACAAACAGTATGTATGGGAATCAA
AGGCTGATGGAGCATTTGCAATTTCTGAGGACACATGGAATGAGCCACTA
GGACGAGGAACCGAGATTAAATTGCACCTCAGAGATGAAGCTGGGGAGTA
CTTGGAAGAGAGCAAGTTGAAGGAGTTGGTGAAGAAATATTCTGAATTTA
TCAACTTCCCCATCTATATCTGGGCCAGCAAAGAGGTTGATGTGGATGTT
CCTGCTGACGAGGATGACTCAAGTGATGAAGAGGAGAAAG
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