FC876354

Overview
NameFC876354
Unique NameFC876354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: TRAP1_RAT (Heat shock protein 75 kDa, mitochondrial OS=Rattus norvegicus GN=Trap1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.678e-23
Identity = 59/143 (41.26%), Postives = 85/143 (59.44%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLN--LIGQFGVGFYSVYLVADYVEVISK--HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYI 420
            D EK  ++I+D GIGMTKE+L+ NLGTIA+SG+ AF+E +Q   + +  +IGQFGVGFYS ++VAD VEV S+    +   Y W S   G F I+E +   P   GT+I +HL+ +                   F++FP+Y+
Sbjct:  150 DAEKGTITIQDTGIGMTKEELVSNLGTIARSGSKAFLEALQHQAETSSRIIGQFGVGFYSAFMVADKVEVYSRPAAPESPGYQWLSDGSGVFEIAEASGVRP---GTKIIIHLKSDCKDFANESRVQDVVTKYSNFVSFPLYL 289          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_SHESW (Chaperone protein htpG OS=Shewanella sp. (strain W3-18-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.678e-23
Identity = 59/145 (40.69%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISK---HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 423
            DK+K  ++I D G+GMT++ +I++LGTIAKSGT+ F + +  + S D  LIGQFGVGFYS ++VA  V V ++   H  D+  +WES+ +G+F +   T      RGTEI LHLRDE                    I+ P+ +W
Sbjct:   70 DKDKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTAEFFKNLSGEASKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKADEAVLWESEGEGSFTVETIT---KASRGTEITLHLRDEEKEFADDWRLRSIITKYSDHISVPVEMW 211          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_SHEPC (Chaperone protein htpG OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=htpG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.678e-23
Identity = 59/145 (40.69%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISK---HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 423
            DK+K  ++I D G+GMT++ +I++LGTIAKSGT+ F + +  + S D  LIGQFGVGFYS ++VA  V V ++   H  D+  +WES+ +G+F +   T      RGTEI LHLRDE                    I+ P+ +W
Sbjct:   70 DKDKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTAEFFKNLSGEASKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKADEAVLWESEGEGSFTVETIT---KASRGTEITLHLRDEEKEFADDWRLRSIITKYSDHISVPVEMW 211          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_SHEB9 (Chaperone protein htpG OS=Shewanella baltica (strain OS195) GN=htpG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.678e-23
Identity = 60/145 (41.38%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISK---HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 423
            DKEK  ++I D G+GMT++ +I++LGTIAKSGT+ F + +  ++S D  LIGQFGVGFYS ++VA  V V ++   H  D+  +WES+ +G F +   T      RGTEI LHLRDE                    I+ P+ +W
Sbjct:   70 DKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTADFFKNLSGESSKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKADEAVLWESEGEGNFTVDTIT---KASRGTEITLHLRDEEKEFADDWRLRSIITKYSDHISVPVEMW 211          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_SHEB8 (Chaperone protein htpG OS=Shewanella baltica (strain OS185) GN=htpG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.678e-23
Identity = 60/145 (41.38%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISK---HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 423
            DKEK  ++I D G+GMT++ +I++LGTIAKSGT+ F + +  ++S D  LIGQFGVGFYS ++VA  V V ++   H  D+  +WES+ +G F +   T      RGTEI LHLRDE                    I+ P+ +W
Sbjct:   70 DKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTADFFKNLSGESSKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKADEAVLWESEGEGNFTVDTIT---KASRGTEITLHLRDEEKEFADDWRLRSIITKYSDHISVPVEMW 211          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_SHEB5 (Chaperone protein htpG OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=htpG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.678e-23
Identity = 60/145 (41.38%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISK---HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIW 423
            DKEK  ++I D G+GMT++ +I++LGTIAKSGT+ F + +  ++S D  LIGQFGVGFYS ++VA  V V ++   H  D+  +WES+ +G F +   T      RGTEI LHLRDE                    I+ P+ +W
Sbjct:   70 DKEKGTVTIEDNGVGMTRDGVIEHLGTIAKSGTADFFKNLSGESSKDSQLIGQFGVGFYSAFIVAKKVTVRTRAAGHKADEAVLWESEGEGNFTVDTIT---KASRGTEITLHLRDEEKEFADDWRLRSIITKYSDHISVPVEMW 211          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_RICCN (Chaperone protein htpG OS=Rickettsia conorii GN=htpG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.003e-22
Identity = 57/116 (49.14%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVIS-KHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            +DK+ + + IRD GIGM K+DLI+NLGTIA+SGT+ F++ +   +  D  LIGQFGVGFYS ++VAD V V S K  +DK ++WES   G + +S+   ++   RGTEI LH++ E
Sbjct:   68 VDKDHRQIIIRDNGIGMNKDDLIENLGTIARSGTANFLKSLSGDSKKDNMLIGQFGVGFYSSFMVADKVTVTSRKAGEDKVHIWESDGLGEYTVSDS--DKEFTRGTEIVLHIKKE 181          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_YERPS (Chaperone protein htpG OS=Yersinia pseudotuberculosis GN=htpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.310e-22
Identity = 59/116 (50.86%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRD 336
            DKEK+ L++ D GIGMT++++I NLGTIAKSGT AF+E +    + D  LIGQFGVGFYS ++VAD V V ++      D    WES  +G + I++ T +E   RGTEI LHLR+
Sbjct:   72 DKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGAPADTGVFWESAGEGDYTIADITKDE---RGTEITLHLRE 184          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_YERPP (Chaperone protein htpG OS=Yersinia pestis (strain Pestoides F) GN=htpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.310e-22
Identity = 59/116 (50.86%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRD 336
            DKEK+ L++ D GIGMT++++I NLGTIAKSGT AF+E +    + D  LIGQFGVGFYS ++VAD V V ++      D    WES  +G + I++ T +E   RGTEI LHLR+
Sbjct:   72 DKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGAPADTGVFWESAGEGDYTIADITKDE---RGTEITLHLRE 184          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_YERPN (Chaperone protein htpG OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=htpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.310e-22
Identity = 59/116 (50.86%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRD 336
            DKEK+ L++ D GIGMT++++I NLGTIAKSGT AF+E +    + D  LIGQFGVGFYS ++VAD V V ++      D    WES  +G + I++ T +E   RGTEI LHLR+
Sbjct:   72 DKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGAPADTGVFWESAGEGDYTIADITKDE---RGTEITLHLRE 184          
The following BLAST results are available for this feature:
BLAST of FC876354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
TRAP1_RAT7.678e-2341.26Heat shock protein 75 kDa, mitochondrial OS=Rattus... [more]
HTPG_SHESW7.678e-2340.69Chaperone protein htpG OS=Shewanella sp. (strain W... [more]
HTPG_SHEPC7.678e-2340.69Chaperone protein htpG OS=Shewanella putrefaciens ... [more]
HTPG_SHEB97.678e-2341.38Chaperone protein htpG OS=Shewanella baltica (stra... [more]
HTPG_SHEB87.678e-2341.38Chaperone protein htpG OS=Shewanella baltica (stra... [more]
HTPG_SHEB57.678e-2341.38Chaperone protein htpG OS=Shewanella baltica (stra... [more]
HTPG_RICCN1.003e-2249.14Chaperone protein htpG OS=Rickettsia conorii GN=ht... [more]
HTPG_YERPS1.310e-2250.86Chaperone protein htpG OS=Yersinia pseudotuberculo... [more]
HTPG_YERPP1.310e-2250.86Chaperone protein htpG OS=Yersinia pestis (strain ... [more]
HTPG_YERPN1.310e-2250.86Chaperone protein htpG OS=Yersinia pestis bv. Anti... [more]

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Properties
Property NameValue
Genbank descriptionC32003G08EF DevOvary1 Citrus clementina cDNA clone C32003G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876354 ID=FC876354; Name=FC876354; organism=Citrus clementina; type=EST; length=490bp
CTAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTAT
GACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAA
CATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATT
GGGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGTTGCTGACTATGT
TGAAGTCATTAGCAAACATAATGATGACAAACAGTATGTATGGGAATCAA
AGGCTGATGGAGCATTTGCAATTTCTGAGGACACATGGAATGAGCCACTA
GGACGAGGAACCGAGATTAAATTGCACCTCAGAGATGAAGCTGGGGAGTA
CTTGGAAGAGAGCAAGTTGAAGGAGTTGGTGAAGAAATATTCTGAATTTA
TCAACTTCCCCATCTATATCTGGGCCAGCAAAGAGGTTGATGTGGATGTT
CCTGCTGACGAGGATGACTCAAGTGATGAAGAGGAGAAAG
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