FC876357

Overview
NameFC876357
Unique NameFC876357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10337 contig Ccv1_Contig10337:1..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_STRCO (Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor GN=rpe PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.088e-35
Identity = 79/161 (49.07%), Postives = 106/161 (65.84%), Query Frame = 2
Query:  143 VTAKIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 625
            + A+I PS+LS+DFA LA EA+ +   GADWLH+D+MD HFVPNLT+G PV+ESL + T   LDCHLM+  P  +     +AGA   TFH E +      L + I++KG R  +ALKP T VE   P  +    ++M+L+MTVEPGFGGQ F+  M+ K+R
Sbjct:    1 MAAQINPSILSADFARLADEAKAVE--GADWLHVDVMDNHFVPNLTLGVPVVESLARATDTPLDCHLMIEAPDRWAPQYVEAGAGSVTFHAEAAAAP-VRLAREIRAKGARASMALKPATPVE---PYEDLLPELDMLLIMTVEPGFGGQAFLDIMLPKIR 155          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_MYCLE (Ribulose-phosphate 3-epimerase OS=Mycobacterium leprae GN=rpe PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.088e-35
Identity = 75/159 (47.17%), Postives = 107/159 (67.30%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            IAPS+L++DFA L  EA  + +  ADWLH+D+MDGHFVPNLTIG PV++SL   +   +DCHLM+ NP  +  P  +AGA   TFH E + DN   +   I++ G + G+ +KPGT +    P ++     + +L+M+VEPGFGGQ F+PE++ KVRT+
Sbjct:    5 IAPSILAADFARLTDEAAVVAS--ADWLHVDVMDGHFVPNLTIGLPVVQSLLAASDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAE-ATDNPVGVAHDIRTAGAKAGIGVKPGTPLN---PYLDILPHFDTLLIMSVEPGFGGQAFIPEVLSKVRTV 157          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_RHOCA (Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.605e-34
Identity = 75/160 (46.88%), Postives = 106/160 (66.25%), Query Frame = 2
Query:  152 KIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            KIAPS+LS+DFA+   E + I   GADW+H+D+MDGHFVPNLT G P + + RKH K  +D HLM++    Y++   +AGA   T HVE +  +    +Q I++ GM+ GVA+ PGT  E +  +++ A   ++V VMTV PGFGGQK++ +M  KVR L
Sbjct:    8 KIAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHFVPNLTFGPPAVAAFRKHVKTVMDVHLMISPVDAYIDAYAQAGADVLTAHVE-AGPHIHRTLQAIRAAGMKSGVAINPGTPAEAIEHVLDIA---DVVCVMTVNPGFGGQKYI-DMTAKVRKL 162          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_SYNY3 (Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803) GN=rpe PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 7.118e-32
Identity = 68/161 (42.24%), Postives = 103/161 (63.98%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVE-ISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPV-EMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            +APS+LS+DF+ L  E + +   GADW+H+D+MDG FVPN+TIG  +++++R  TK  LD HLM+  P  YVE   KAGA   + HVE  +  +    + +I+  G + G  L P T ++     +E   PV +++L+M+V PGFGGQ F+PE++ K+R L
Sbjct:    7 VAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLD----FLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRAL 163          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_TREPA (Ribulose-phosphate 3-epimerase OS=Treponema pallidum GN=rpe PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.753e-30
Identity = 71/162 (43.83%), Postives = 99/162 (61.11%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSV---EEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            +APS+LS+DF+ L      +   GA W+H+D+MDGHFVPNLT GAPV+  LR  T    D HLMV+ P D +E   +AGA   TFH+E ++ +   L+  I+ +G++ G++L P T V    EV P       V++VLVMTV PGF GQ+ +   + KV  L
Sbjct:    7 LAPSLLSADFSALDRALVYLEAHGAQWVHLDVMDGHFVPNLTFGAPVLRCLRSKTHLPFDVHLMVSRPADLIEDFVQAGADFLTFHIE-AEVHAHRLIHAIRGRGVKVGISLVPSTPVAALSEVLPF------VDLVLVMTVNPGFSGQQMIAHCLSKVSAL 161          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_BACSU (Ribulose-phosphate 3-epimerase OS=Bacillus subtilis GN=rpe PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.753e-30
Identity = 67/158 (42.41%), Postives = 103/158 (65.19%), Query Frame = 2
Query:  152 KIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 625
            K+APS+LS+DFA L +E + +   GAD +H+D+MDGHFVPN+TIG  ++E++R  T   LD HLM+  P  Y+    KAGA   + H E +  +    +Q IK +G++ GV L P T V+ +  + +    +++VL+MTV PGFGGQKF+  ++ K++
Sbjct:    3 KVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLPLDVHLMIEEPDRYIPAFAKAGADILSVHAE-ACPHLHRTIQLIKEQGVKAGVVLNPHTPVQVIEHVFD---DLDLVLLMTVNPGFGGQKFIHSVLPKIK 156          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_CHLTR (Ribulose-phosphate 3-epimerase OS=Chlamydia trachomatis GN=rpe PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.939e-29
Identity = 64/165 (38.79%), Postives = 105/165 (63.64%), Query Frame = 2
Query:  131 KKMGVTAKIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 625
            KK GV   +APS++ +D A +  EA  I   GAD +H+D+MDGHFVPN+T G  V+ ++ + T+ +L+ H M+  P ++VE   KAGA     H E + +N +E++  I+  G++ GVA  P TS+E V   +      +++L+M+V PGF GQKF+P+ +++++
Sbjct:    7 KKQGVL--VAPSIMGADLACIGREARNIEESGADLIHIDVMDGHFVPNITFGPGVVAAINRSTELFLEVHAMIYTPFEFVEAFVKAGADRIIVHFE-AAENIKEIISYIQKCGVQAGVAFSPETSIEFVTSFIP---LCDVILLMSVHPGFCGQKFIPDTIERIQ 165          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_CHLMU (Ribulose-phosphate 3-epimerase OS=Chlamydia muridarum GN=rpe PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.307e-29
Identity = 64/165 (38.79%), Postives = 104/165 (63.03%), Query Frame = 2
Query:  131 KKMGVTAKIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 625
            KK GV   IAPS++ +D A L   A  I   GA+ +H+D+MDGHFVPN+T G  +I ++ + T  +L+ H M+  P ++VE   KAGA     H E + +N +E++  I+  G++ G+A  P TS+E +   +      +++L+M+V+PGF GQKF+P+ ++K+R
Sbjct:    2 KKQGVL--IAPSIMGADLACLGDAARNIEESGANLIHIDVMDGHFVPNITFGPGIIAAINRSTDLFLEVHAMIYTPFEFVEAFVKAGADRIIVHFE-AAENLKEILDYIRKCGVQAGIAFSPETSIEFISAFIP---LCDVILLMSVQPGFCGQKFIPDTIEKIR 160          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_HELPJ (Ribulose-phosphate 3-epimerase OS=Helicobacter pylori J99 GN=rpe PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.257e-28
Identity = 68/156 (43.59%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  152 KIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK 619
            K+APS+LS+DF +LA E E + N  AD+LH+D+MDGH+VPNLT+G  ++E++ + ++  LD HLMV N   +VE          + H E  K +   ++Q IKS G+ PG+ L P T  E +  L+E    V +VL+M+V PGFGGQKF+  +++K
Sbjct:    2 KVAPSLLSADFMHLAKEIESVSN--ADFLHVDVMDGHYVPNLTMGPVILENVTQMSQVPLDVHLMVENASFFVELFAPLNPQIISIHAENEK-HPHRVLQLIKSSGITPGIVLNPHTHEESIKYLLES---VGLVLLMSVNPGFGGQKFLDLVLEK 151          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: ALSE_ECOLI (D-allulose-6-phosphate 3-epimerase OS=Escherichia coli (strain K12) GN=alsE PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.641e-28
Identity = 66/160 (41.25%), Postives = 92/160 (57.50%), Query Frame = 2
Query:  152 KIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            KI+PS++  D      + E  ++  AD+ H+DIMDGHFVPNLT+    +  ++K     LDCHLMVT P DY+  L +AGA   T H E        L+  I+   M+ G+ L P T VE +   +  A   + + VMTV+PGF GQ F+PEM+DK+  L
Sbjct:    2 KISPSLMCMDLLKFKEQIE-FIDSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKA---DKITVMTVDPGFAGQPFIPEMLDKLAEL 157          
The following BLAST results are available for this feature:
BLAST of FC876357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RPE_STRCO3.088e-3549.07Ribulose-phosphate 3-epimerase OS=Streptomyces coe... [more]
RPE_MYCLE3.088e-3547.17Ribulose-phosphate 3-epimerase OS=Mycobacterium le... [more]
RPE_RHOCA7.605e-3446.88Ribulose-phosphate 3-epimerase OS=Rhodobacter caps... [more]
RPE_SYNY37.118e-3242.24Ribulose-phosphate 3-epimerase OS=Synechocystis sp... [more]
RPE_TREPA1.753e-3043.83Ribulose-phosphate 3-epimerase OS=Treponema pallid... [more]
RPE_BACSU1.753e-3042.41Ribulose-phosphate 3-epimerase OS=Bacillus subtili... [more]
RPE_CHLTR1.939e-2938.79Ribulose-phosphate 3-epimerase OS=Chlamydia tracho... [more]
RPE_CHLMU3.307e-2938.79Ribulose-phosphate 3-epimerase OS=Chlamydia murida... [more]
RPE_HELPJ1.257e-2843.59Ribulose-phosphate 3-epimerase OS=Helicobacter pyl... [more]
ALSE_ECOLI1.641e-2841.25D-allulose-6-phosphate 3-epimerase OS=Escherichia ... [more]

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Properties
Property NameValue
Genbank descriptionC32003G11EF DevOvary1 Citrus clementina cDNA clone C32003G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876357 ID=FC876357; Name=FC876357; organism=Citrus clementina; type=EST; length=633bp
GATTTTAGCTTGCAACAAAAAAAAAAGAATCTTCTTGTCTCTCCGATTTC
TCTTCTCCGACAAAAAGAGTCCAAACCCGTGCGCATCTGAATCGGGTCGC
GTCGTGTCGTAAATCCAACCAAAACAAAAAAAAAAAATGGGCGTAACGGC
AAAAATAGCACCGTCAATGTTGTCGTCGGACTTCGCCAACTTAGCATCCG
AGGCCGAGCGCATACTCAACTGTGGGGCCGATTGGCTTCACATGGACATC
ATGGATGGGCACTTTGTTCCAAATCTAACTATTGGTGCTCCAGTGATTGA
AAGTTTGAGAAAGCATACAAAGGCATATCTTGATTGTCACCTAATGGTAA
CAAATCCTCTTGATTATGTTGAACCTCTGGGTAAAGCAGGTGCTTCAGGT
TTTACCTTTCATGTGGAGATATCCAAAGATAACTGGCAAGAACTTGTCCA
AAGAATTAAGTCTAAGGGCATGAGGCCTGGTGTGGCATTGAAGCCTGGTA
CATCCGTTGAAGAAGTTTATCCCCTGGTTGAAGGTGCAAATCCTGTGGAA
ATGGTTCTTGTAATGACTGTAGAACCTGGATTTGGTGGTCAAAAGTTCAT
GCCAGAAATGATGGATAAGGTGCGTACATTGAG
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