FC876357

Overview
NameFC876357
Unique NameFC876357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10337 contig Ccv1_Contig10337:1..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_SPIOL (Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea GN=RPE PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.143e-28
Identity = 73/202 (36.14%), Postives = 113/202 (55.94%), Query Frame = 2
Query:   35 LSLRFLFSDKKSPNPCASESGRVVS*IQPKQK--KKMGVTAKIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEI-SKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            L++R L     SPN       +V + ++   +  K       ++PS+LS++FA L  + + +   G DW+H+D+MDG FVPN+TIG  V+++LR  T   LD HLM+  P   V    KAGA   + H E+ S  +    V +IKS G + GV L PGT +  +  +++    V++VL+M+V PGFGGQ F+   + K+  L
Sbjct:   22 LNIRKLQPSTSSPNSLTFTRRKVQTLVKATSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVLNPGTPLSTIEYVLD---VVDLVLIMSVNPGFGGQSFIESQVKKISDL 220          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_SOLTU (Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.143e-28
Identity = 65/160 (40.62%), Postives = 97/160 (60.62%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            ++PS+LS++F+ L  + + I   G DW+H+D+MDG FVPN+TIG  V++SLR  T   LD HLM+  P   V    KAGA   + H E S   +    + +IKS G + GV L PGT +  +  +++    V++VL+M+V PGFGGQ F+   + K+  L
Sbjct:   59 VSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDA---VDLVLIMSVNPGFGGQSFIESQVKKISDL 215          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_RHORU (Ribulose-phosphate 3-epimerase OS=Rhodospirillum rubrum GN=cbbE PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 4.775e-28
Identity = 69/161 (42.86%), Postives = 99/161 (61.49%), Query Frame = 2
Query:  152 KIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLD-YVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            +IAPS+LS+DFA            GAD LH D+MD H+VPNLT+G  V  +LR HT   +D HLM T P+D  ++   +AGA   TFH E S D+    VQ I+ +G++ GVAL P + +  +  ++E    +++VL+M+V PGFGGQ F+P  + K+  L
Sbjct:    6 RIAPSLLSADFAISRPRCPSDGRTGADILHFDVMDNHYVPNLTVGPLVCAALRPHTSLPIDVHLM-TRPVDPLIDSFAEAGADMITFHPEAS-DHVHRSVQMIRKRGLKAGVALNPASPLSLLDHILE---DLDLVLIMSVNPGFGGQSFIPSALPKIAAL 161          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_SHIFL (Ribulose-phosphate 3-epimerase OS=Shigella flexneri GN=rpe PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.144e-28
Identity = 69/159 (43.40%), Postives = 102/159 (64.15%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKH-TKAYLDCHLMVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 625
            IAPS+LS+DFA L  +  + L  GAD +H D+MD H+VPNLTIG  V++SLR +   A +D HLMV  P+D + P    AGAS  TFH E S ++    +Q IK  G + G+   P T +  +  +++    ++++L+M+V PGFGGQ F+P+ +DK+R
Sbjct:    6 IAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMV-KPVDRIVPDFAAAGASIITFHPEAS-EHVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMD---KLDVILLMSVNPGFGGQSFIPQTLDKLR 159          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_ECOLI (Ribulose-phosphate 3-epimerase OS=Escherichia coli (strain K12) GN=rpe PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.144e-28
Identity = 69/159 (43.40%), Postives = 102/159 (64.15%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKH-TKAYLDCHLMVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 625
            IAPS+LS+DFA L  +  + L  GAD +H D+MD H+VPNLTIG  V++SLR +   A +D HLMV  P+D + P    AGAS  TFH E S ++    +Q IK  G + G+   P T +  +  +++    ++++L+M+V PGFGGQ F+P+ +DK+R
Sbjct:    6 IAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMV-KPVDRIVPDFAAAGASIITFHPEAS-EHVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMD---KLDVILLMSVNPGFGGQSFIPQTLDKLR 159          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_ECOL6 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O6 GN=rpe PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.144e-28
Identity = 69/159 (43.40%), Postives = 102/159 (64.15%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKH-TKAYLDCHLMVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 625
            IAPS+LS+DFA L  +  + L  GAD +H D+MD H+VPNLTIG  V++SLR +   A +D HLMV  P+D + P    AGAS  TFH E S ++    +Q IK  G + G+   P T +  +  +++    ++++L+M+V PGFGGQ F+P+ +DK+R
Sbjct:    6 IAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMV-KPVDRIVPDFAAAGASIITFHPEAS-EHVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMD---KLDVILLMSVNPGFGGQSFIPQTLDKLR 159          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_ECO57 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O157:H7 GN=rpe PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.144e-28
Identity = 69/159 (43.40%), Postives = 102/159 (64.15%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKH-TKAYLDCHLMVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 625
            IAPS+LS+DFA L  +  + L  GAD +H D+MD H+VPNLTIG  V++SLR +   A +D HLMV  P+D + P    AGAS  TFH E S ++    +Q IK  G + G+   P T +  +  +++    ++++L+M+V PGFGGQ F+P+ +DK+R
Sbjct:    6 IAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMV-KPVDRIVPDFAAAGASIITFHPEAS-EHVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMD---KLDVILLMSVNPGFGGQSFIPQTLDKLR 159          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_HELPY (Ribulose-phosphate 3-epimerase OS=Helicobacter pylori GN=rpe PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.814e-27
Identity = 67/156 (42.95%), Postives = 100/156 (64.10%), Query Frame = 2
Query:  152 KIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK 619
            K+APS+LS+DF +LA E E + N  AD+LH+D+MDGH+VPNLT+G  V+E++ + ++  LD HLMV N   + E          + H E  K +   ++Q IK+ G+ PG+ L P T  E +  L+E    V +VL+M+V PGFGGQKF+  +++K
Sbjct:    2 KVAPSLLSADFMHLAKEIESVSN--ADFLHVDVMDGHYVPNLTMGPVVLENVTQMSQVPLDVHLMVENASFFAELFAPLKPQIISIHAENEK-HPHRVLQLIKNLGITPGIVLNPHTHEESIKYLLES---VGLVLLMSVNPGFGGQKFLDLVLEK 151          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_CHLPN (Ribulose-phosphate 3-epimerase OS=Chlamydia pneumoniae GN=rpe PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.095e-27
Identity = 58/156 (37.18%), Postives = 99/156 (63.46%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKV 622
            + PS++ +D   L  EA+++   G+D++H+DIMDGHFVPNLT G  +I ++ + T  +L+ H M+ NP +++E   ++GA     H E S+D  +EL+  IK  G++ G+A  P TS+E +   +      ++V++M+V PGF GQ F+P  ++K+
Sbjct:    9 VGPSIMGADLTCLGVEAKKLEQAGSDFIHIDIMDGHFVPNLTFGPGIIAAINRSTDLFLEVHAMIYNPFEFIESFVRSGADRIIVHFEASED-IKELLSYIKKCGVQAGLAFSPDTSIEFLPSFLPFC---DVVVLMSVYPGFTGQSFLPNTIEKI 160          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_ORYSJ (Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=RPE PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 5.279e-27
Identity = 68/197 (34.52%), Postives = 112/197 (56.85%), Query Frame = 2
Query:   74 NPCASESGRVVS*IQPKQKKKMGVTAKI----------APSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKD-NWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            +P A+  GR ++   P++  ++  ++++          +PS+LS++F+ L  + + +   G DW+H+D+MDG FVPN+TIG  V+++LR  T   LD HLM+  P   V    KAGA   + H E S   +    V +IKS G + GV L P T +  +  +++    V++VL+M+V PGFGGQ F+   + K+  L
Sbjct:   16 SPRAASLGRRLAFSSPRKAFRVRASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLTAIDYVLD---VVDLVLIMSVNPGFGGQSFIESQVKKIAEL 209          
The following BLAST results are available for this feature:
BLAST of FC876357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RPE_SPIOL2.143e-2836.14Ribulose-phosphate 3-epimerase, chloroplastic OS=S... [more]
RPE_SOLTU2.143e-2840.63Ribulose-phosphate 3-epimerase, chloroplastic (Fra... [more]
RPE_RHORU4.775e-2842.86Ribulose-phosphate 3-epimerase OS=Rhodospirillum r... [more]
RPE_SHIFL8.144e-2843.40Ribulose-phosphate 3-epimerase OS=Shigella flexner... [more]
RPE_ECOLI8.144e-2843.40Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_ECOL68.144e-2843.40Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_ECO578.144e-2843.40Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_HELPY1.814e-2742.95Ribulose-phosphate 3-epimerase OS=Helicobacter pyl... [more]
RPE_CHLPN3.095e-2737.18Ribulose-phosphate 3-epimerase OS=Chlamydia pneumo... [more]
RPE_ORYSJ5.279e-2734.52Ribulose-phosphate 3-epimerase, chloroplastic OS=O... [more]

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Properties
Property NameValue
Genbank descriptionC32003G11EF DevOvary1 Citrus clementina cDNA clone C32003G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876357 ID=FC876357; Name=FC876357; organism=Citrus clementina; type=EST; length=633bp
GATTTTAGCTTGCAACAAAAAAAAAAGAATCTTCTTGTCTCTCCGATTTC
TCTTCTCCGACAAAAAGAGTCCAAACCCGTGCGCATCTGAATCGGGTCGC
GTCGTGTCGTAAATCCAACCAAAACAAAAAAAAAAAATGGGCGTAACGGC
AAAAATAGCACCGTCAATGTTGTCGTCGGACTTCGCCAACTTAGCATCCG
AGGCCGAGCGCATACTCAACTGTGGGGCCGATTGGCTTCACATGGACATC
ATGGATGGGCACTTTGTTCCAAATCTAACTATTGGTGCTCCAGTGATTGA
AAGTTTGAGAAAGCATACAAAGGCATATCTTGATTGTCACCTAATGGTAA
CAAATCCTCTTGATTATGTTGAACCTCTGGGTAAAGCAGGTGCTTCAGGT
TTTACCTTTCATGTGGAGATATCCAAAGATAACTGGCAAGAACTTGTCCA
AAGAATTAAGTCTAAGGGCATGAGGCCTGGTGTGGCATTGAAGCCTGGTA
CATCCGTTGAAGAAGTTTATCCCCTGGTTGAAGGTGCAAATCCTGTGGAA
ATGGTTCTTGTAATGACTGTAGAACCTGGATTTGGTGGTCAAAAGTTCAT
GCCAGAAATGATGGATAAGGTGCGTACATTGAG
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