FC876360

Overview
NameFC876360
Unique NameFC876360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876360 vs. ExPASy Swiss-Prot
Match: CHS3_BROFI (Chalcone synthase 3 OS=Bromheadia finlaysoniana GN=CHS3 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.856e-96
Identity = 153/178 (85.96%), Postives = 169/178 (94.94%), Query Frame = 1 
Query:   67 VQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENN 600
            ++EIR AQRA+GPA VLAIGT+TP +++ QADYPDYYFRITKSEH+TELKEKFKRMCDKSMIKKRYMYLTEEILKENPN+CA+MAPSLDARQDIVV EVPKL KEAA +AIKEWG PKS+ITHLIFCTTSG+DMPGADYQLT+L+GLRPSV RFM+YQQGCFAGGTVLRLAKDLAENN
Sbjct:    5 MEEIRQAQRAEGPAAVLAIGTSTPPNALYQADYPDYYFRITKSEHLTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNICAFMAPSLDARQDIVVTEVPKLAKEAAVRAIKEWGHPKSRITHLIFCTTSGIDMPGADYQLTRLLGLRPSVNRFMLYQQGCFAGGTVLRLAKDLAENN 182

HSP 2 Score: 51.2174 bits (121), Expect = 1.856e-96
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 3 
Query:  603 GARVLVVCSEITAVTFRGPADTHLDS 680
            GARVLVVCSEITAVTFRGP+++HLDS
Sbjct:  184 GARVLVVCSEITAVTFRGPSESHLDS 209
[Close]
BLAST of FC876360 vs. ExPASy Swiss-Prot
Match: CHS3_MEDSA (Chalcone synthase 4-1 OS=Medicago sativa GN=CHS4-1 PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 1.856e-96
Identity = 152/182 (83.52%), Postives = 169/182 (92.86%), Query Frame = 1 
Query:   58 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNK 603
            M +V EIR AQRA+GPAT++AIGTA P++ V Q+ YPD+YF+IT SEH  ELKEKF+RMCDKSMIK+RYMYLTEEILKENP++C YMAPSLDARQD+VVVEVP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNK
Sbjct:    1 MVSVSEIRQAQRAEGPATIMAIGTANPSNCVEQSTYPDFYFKITNSEHKVELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNK 182

HSP 2 Score: 54.299 bits (129), Expect = 1.856e-96
Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:  600 QGARVLVVCSEITAVTFRGPADTHLDS 680
            +GARVLVVCSE+TAVTFRGP+DTHLDS
Sbjct:  182 KGARVLVVCSEVTAVTFRGPSDTHLDS 208
[Close]
BLAST of FC876360 vs. ExPASy Swiss-Prot
Match: CHS1_TRISU (Chalcone synthase 1 OS=Trifolium subterraneum GN=CHS1 PE=3 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 1.856e-96
Identity = 154/182 (84.62%), Postives = 167/182 (91.76%), Query Frame = 1 
Query:   58 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNK 603
            M +V EIR AQRA+GPAT+LAIGTA P + V QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK RYMYLTEEILKENP++C YMAPSLDARQD+VVVEVP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNK
Sbjct:    1 MVSVAEIRKAQRAEGPATILAIGTANPPNRVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNK 182

HSP 2 Score: 54.299 bits (129), Expect = 1.856e-96
Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:  600 QGARVLVVCSEITAVTFRGPADTHLDS 680
            +GARVLVVCSE+TAVTFRGP+DTHLDS
Sbjct:  182 KGARVLVVCSEVTAVTFRGPSDTHLDS 208
[Close]
BLAST of FC876360 vs. ExPASy Swiss-Prot
Match: CHS4_PEA (Chalcone synthase 4 OS=Pisum sativum GN=CHS4 PE=3 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 2.422e-96
Identity = 153/182 (84.07%), Postives = 168/182 (92.31%), Query Frame = 1 
Query:   58 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNK 603
            M +V EIR AQRA+GPAT+LAIGTA PA+ V Q+ YPD+YFRIT SEH  ELK+KF+RMCDKSMI +RYMYLTEEILKENP++C YMAPSLDARQD+VVVEVP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNK
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFRITNSEHKIELKQKFQRMCDKSMINRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNK 182

HSP 2 Score: 54.299 bits (129), Expect = 2.422e-96
Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:  600 QGARVLVVCSEITAVTFRGPADTHLDS 680
            +GARVLVVCSE+TAVTFRGP+DTHLDS
Sbjct:  182 KGARVLVVCSEVTAVTFRGPSDTHLDS 208
[Close]
BLAST of FC876360 vs. ExPASy Swiss-Prot
Match: CHS1_PEA (Chalcone synthase 1 OS=Pisum sativum GN=CHS1 PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 2.422e-96
Identity = 153/182 (84.07%), Postives = 168/182 (92.31%), Query Frame = 1 
Query:   58 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNK 603
            M +V EIR  QRA+GPAT+LAIGTA PA+ V Q+ YPD+YF+IT SEH T LKEKF+RMCDKSMIK+RYMYLTEEILKENP++C YMAPSLDARQD+VVVEVP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNK
Sbjct:    1 MVSVSEIRKPQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTVLKEKFQRMCDKSMIKRRYMYLTEEILKENPSLCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNK 182

HSP 2 Score: 54.299 bits (129), Expect = 2.422e-96
Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:  600 QGARVLVVCSEITAVTFRGPADTHLDS 680
            +GARVLVVCSE+TAVTFRGP+DTHLDS
Sbjct:  182 KGARVLVVCSEVTAVTFRGPSDTHLDS 208
[Close]
BLAST of FC876360 vs. ExPASy Swiss-Prot
Match: CHSY_ARAAL (Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 2.422e-96
Identity = 152/180 (84.44%), Postives = 167/180 (92.78%), Query Frame = 1 
Query:   64 TVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNK 603
            +++EIR AQRADGPA +L IGTA P + V QA+YPDYYFRIT S+HMT+LKEKFKRMCDKSMI+KR+M+LTEE LKENP MCAYMAPSLD RQDIVVVEVPKLGKEAA KAIKEWGQPKSKITH++FCTTSGVDMPGADYQLTKL+GLRPSVKR MMYQQGCFAGGTVLRLAKDLAENN+
Sbjct:    4 SLEEIRKAQRADGPAGILGIGTANPPNHVLQAEYPDYYFRITNSDHMTDLKEKFKRMCDKSMIRKRHMHLTEEFLKENPKMCAYMAPSLDTRQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNR 183

HSP 2 Score: 54.6842 bits (130), Expect = 2.422e-96
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:  600 QGARVLVVCSEITAVTFRGPADTHLDS 680
            +GARVLVVCSEITAVTFRGP+DTHLDS
Sbjct:  183 RGARVLVVCSEITAVTFRGPSDTHLDS 209
[Close]
BLAST of FC876360 vs. ExPASy Swiss-Prot
Match: CHSY_ARATH (Chalcone synthase OS=Arabidopsis thaliana GN=CHS PE=1 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 3.159e-96
Identity = 152/181 (83.98%), Postives = 168/181 (92.82%), Query Frame = 1 
Query:   61 ATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNK 603
            +++ EIR AQRADGPA +LAIGTA P + V QA+YPDYYFRIT SEHMT+LKEKFKRMCDKS I+KR+M+LTEE LKENP+MCAYMAPSLD RQDIVVVEVPKLGKEAA KAIKEWGQPKSKITH++FCTTSGVDMPGADYQLTKL+GLRPSVKR MMYQQGCFAGGTVLR+AKDLAENN+
Sbjct:    7 SSLDEIRQAQRADGPAGILAIGTANPENHVLQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHLTEEFLKENPHMCAYMAPSLDTRQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRIAKDLAENNR 187

HSP 2 Score: 54.6842 bits (130), Expect = 3.159e-96
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:  600 QGARVLVVCSEITAVTFRGPADTHLDS 680
            +GARVLVVCSEITAVTFRGP+DTHLDS
Sbjct:  187 RGARVLVVCSEITAVTFRGPSDTHLDS 213
[Close]
BLAST of FC876360 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 4.121e-96
Identity = 154/179 (86.03%), Postives = 170/179 (94.97%), Query Frame = 1 
Query:   67 VQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNK 603
            V+ IR AQRA+GPAT+LAIGTATPA+ V QADYPDYYFR+T+SEHM +LKEKF+RMCDKSMI+KRYM++TEE LKENP+MC +MAPSLDARQD+VVVEVPKLGKEAATKAIKEWG PKSKITHL+FCTTSGVDMPGADYQLTKL+GLRPSVKR MMYQQGCFAGGTVLRLAKDLAENNK
Sbjct:   10 VETIRKAQRAEGPATILAIGTATPANCVYQADYPDYYFRVTESEHMVDLKEKFQRMCDKSMIRKRYMHITEEFLKENPSMCKFMAPSLDARQDLVVVEVPKLGKEAATKAIKEWGFPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNK 188

HSP 2 Score: 49.2914 bits (116), Expect = 4.121e-96
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 3 
Query:  600 QGARVLVVCSEITAVTFRGPADTHLDS 680
            +GARVLVVCSEITAVTFRGP + HLDS
Sbjct:  188 KGARVLVVCSEITAVTFRGPNEGHLDS 214
[Close]
BLAST of FC876360 vs. ExPASy Swiss-Prot
Match: CHSD_IPONI (Chalcone synthase D OS=Ipomoea nil GN=CHSD PE=2 SV=1)

HSP 1 Score: 325.094 bits (832), Expect = 4.122e-96
Identity = 155/182 (85.16%), Postives = 171/182 (93.96%), Query Frame = 1 
Query:   58 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNK 603
            M TV+E+R AQRA+GPAT+LAIGTATPA+ V+Q+ YPDYYFRIT S+HMT+LK+KF+RMCDKSMI KRYM+LTEEILKENP+ C YMAPSLDARQDIVVVEVPKLGKEAA  AIKEWGQPKSKITH+IFCTTSGVDMPGADYQLTKL+GLRPSVKR MMYQQGCFAGGTVLR+AKDLAENNK
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTATPANCVDQSTYPDYYFRITNSDHMTDLKQKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIVVVEVPKLGKEAAQSAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRVAKDLAENNK 182

HSP 2 Score: 48.1358 bits (113), Expect = 4.122e-96
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 3 
Query:  600 QGARVLVVCSEITAVTFRGPADTHLDS 680
            + ARVLVVCSEIT VTFRGP +THLDS
Sbjct:  182 KAARVLVVCSEITVVTFRGPNETHLDS 208
[Close]
BLAST of FC876360 vs. ExPASy Swiss-Prot
Match: CHS1_SOLLC (Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS1 PE=2 SV=2)

HSP 1 Score: 320.857 bits (821), Expect = 7.016e-96
Identity = 154/182 (84.62%), Postives = 166/182 (91.21%), Query Frame = 1 
Query:   58 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNK 603
            M TV+E R AQRA+GPAT+LAIGT+TP++ V+Q+ YPDYYFRIT SEH TELKEKFKRMCDKSMIKKRYM+LTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGK    KAIKEWGQPKSKITHL+FCTTSGVDMP  DYQL KL+ +RPSVKR MMYQQGCFAGGTVLRLAKDLAENNK
Sbjct:    1 MVTVEEYRKAQRAEGPATILAIGTSTPSNCVDQSTYPDYYFRITNSEHKTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKRGTQKAIKEWGQPKSKITHLVFCTTSGVDMPACDYQLAKLLPVRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNK 182

HSP 2 Score: 51.6026 bits (122), Expect = 7.016e-96
Identity = 23/27 (85.19%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:  600 QGARVLVVCSEITAVTFRGPADTHLDS 680
            +GARVLVVCSEITAVTFRGP+++HLDS
Sbjct:  182 KGARVLVVCSEITAVTFRGPSESHLDS 208
The following BLAST results are available for this feature:
BLAST of FC876360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS3_BROFI1.856e-9685.96Chalcone synthase 3 OS=Bromheadia finlaysoniana GN... [more]
CHS3_MEDSA1.856e-9683.52Chalcone synthase 4-1 OS=Medicago sativa GN=CHS4-1... [more]
CHS1_TRISU1.856e-9684.62Chalcone synthase 1 OS=Trifolium subterraneum GN=C... [more]
CHS4_PEA2.422e-9684.07Chalcone synthase 4 OS=Pisum sativum GN=CHS4 PE=3 ... [more]
CHS1_PEA2.422e-9684.07Chalcone synthase 1 OS=Pisum sativum GN=CHS1 PE=2 ... [more]
CHSY_ARAAL2.422e-9684.44Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=... [more]
CHSY_ARATH3.159e-9683.98Chalcone synthase OS=Arabidopsis thaliana GN=CHS P... [more]
CHS3_GERHY4.121e-9686.03Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]
CHSD_IPONI4.122e-9685.16Chalcone synthase D OS=Ipomoea nil GN=CHSD PE=2 SV... [more]
CHS1_SOLLC7.016e-9684.62Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS... [more]

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Properties
Property NameValue
Genbank descriptionC32003H03EF DevOvary1 Citrus clementina cDNA clone C32003H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876360 ID=FC876360; Name=FC876360; organism=Citrus clementina; type=EST; length=682bp
GAGTGCACACTCACCAAGCACGAGCCACAAACATATTCATTAAGGGTTCA
ACTTGAAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACG
GCCCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGCGTC
AACCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCA
TATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGATGA
TTAAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAACCCC
AACATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGT
GGTGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCA
AAGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACC
ACCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGAT
CGGCCTGCGCCCCTCCGTCAAGCGCTTCATGATGTACCAACAAGGATGTT
TCGCCGGTGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACAAC
AAGGCGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACGGCGGTCACTTTC
CGCGGNCCTGCCGATACTCATCTTGATTCTCT
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