FC876363

Overview
NameFC876363
Unique NameFC876363
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876363 vs. ExPASy Swiss-Prot
Match: CHS1_CITSI (Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 3.571e-102
Identity = 183/214 (85.51%), Postives = 198/214 (92.52%), Query Frame = 1
Query:   58 MATVRESRNAQRADGPATVLAIGTGTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMWDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIEVVEVPKLGKEAATKAIKEWGQPKTKITHLIFCTTSGVDMTGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQAL 699
            M TV E R AQRA GPAT++AIGT TP + V+Q+ YPDYYFRIT SEHMT+LKEKFKRM DKSMIKKRYMYLTEEILKENPN+CAYMAPSLD RQD+ VVEVP+LGK AAT+AIKEWGQPK+KITHL+FCTTSGVDM GADY+LTKL+GLRPSVKR MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+DTHLDSLVGQAL
Sbjct:    1 MVTVDEVRKAQRAQGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYMYLTEEILKENPNVCAYMAPSLDTRQDMVVVEVPRLGK-AATEAIKEWGQPKSKITHLVFCTTSGVDMPGADYRLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQAL 213          
BLAST of FC876363 vs. ExPASy Swiss-Prot
Match: CHS7_SORBI (Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=3 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 4.665e-102
Identity = 181/212 (85.38%), Postives = 196/212 (92.45%), Query Frame = 1
Query:   64 TVRESRNAQRADGPATVLAIGTGTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMWDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIEVVEVPKLGKEAATKAIKEWGQPKTKITHLIFCTTSGVDMTGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQAL 699
            TV E R AQRA GPATVLAIGT TPA+ V+QADYPDYYFRITKSEHMT+LKEKFKRM DKS I+KRYM+LTEE L ENPNMCAYMAPSLDARQDI VVEVPKLGK AA KAIKEWGQPK+KITHL+FCTTSGVDM GADYQLTK++GLRPSV R MMYQQGCFAGGTVLR+AKDLAENN+GARVLVVCSEITAVTFRGP+++HLDS+VGQAL
Sbjct:    7 TVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTDLKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQDIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQAL 218          
BLAST of FC876363 vs. ExPASy Swiss-Prot
Match: CHS3_SORBI (Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=3 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 4.665e-102
Identity = 181/212 (85.38%), Postives = 196/212 (92.45%), Query Frame = 1
Query:   64 TVRESRNAQRADGPATVLAIGTGTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMWDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIEVVEVPKLGKEAATKAIKEWGQPKTKITHLIFCTTSGVDMTGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQAL 699
            TV E R AQRA GPATVLAIGT TPA+ V+QADYPDYYFRITKSEHMT+LKEKFKRM DKS I+KRYM+LTEE L ENPNMCAYMAPSLDARQDI VVEVPKLGK AA KAIKEWGQPK+KITHL+FCTTSGVDM GADYQLTK++GLRPSV R MMYQQGCFAGGTVLR+AKDLAENN+GARVLVVCSEITAVTFRGP+++HLDS+VGQAL
Sbjct:    7 TVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTDLKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQDIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSMVGQAL 218          
BLAST of FC876363 vs. ExPASy Swiss-Prot
Match: CHS3_CAMSI (Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 PE=2 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 4.665e-102
Identity = 184/214 (85.98%), Postives = 195/214 (91.12%), Query Frame = 1
Query:   58 MATVRESRNAQRADGPATVLAIGTGTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMWDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIEVVEVPKLGKEAATKAIKEWGQPKTKITHLIFCTTSGVDMTGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQAL 699
            M TV +   AQRA GPATVLAIGT TP + V+Q+ YPDYYFRIT SEH  ELKEKFKRM DKSMIKKRYMYLTEEILKENP +C YMAPSLDARQD+ VVEVPKLGKEAATKAIKEWGQPK+KITHL+FCTTSGVDM GADYQLTKL+GLRPSVKR MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+DTHLDSLVGQ+L
Sbjct:    1 MVTVEDVWRAQRARGPATVLAIGTATPPNCVDQSTYPDYYFRITNSEHKVELKEKFKRMCDKSMIKKRYMYLTEEILKENPLVCEYMAPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQSL 214          
BLAST of FC876363 vs. ExPASy Swiss-Prot
Match: CHSY_RAPSA (Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 7.956e-102
Identity = 181/213 (84.98%), Postives = 197/213 (92.49%), Query Frame = 1
Query:   61 ATVRESRNAQRADGPATVLAIGTGTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMWDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIEVVEVPKLGKEAATKAIKEWGQPKTKITHLIFCTTSGVDMTGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQAL 699
            +++ E R AQRADGPA +LAIGT  PA+ V QA+YPDYYFRIT SEHMT+LKEKFKRM DKS I+KR+M+LTEE LKENPNMCAYMAPSLDARQDI VVEVPKLGKEAA KAIKEWGQPK+KITH++FCTTSGVDM GADYQLTKL+GLRPSVKR MMYQQGCFAGGTVLRLAKDLAENN+GARVLVVCSEITAVTFRGP+DTHLDSLVGQAL
Sbjct:    6 SSLDEIRKAQRADGPAGILAIGTANPANHVLQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHLTEEFLKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQAL 218          
BLAST of FC876363 vs. ExPASy Swiss-Prot
Match: CHS6_TRISU (Chalcone synthase 6 OS=Trifolium subterraneum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 7.956e-102
Identity = 180/214 (84.11%), Postives = 196/214 (91.59%), Query Frame = 1
Query:   58 MATVRESRNAQRADGPATVLAIGTGTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMWDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIEVVEVPKLGKEAATKAIKEWGQPKTKITHLIFCTTSGVDMTGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQAL 699
            M +V E R AQRA+GPAT+LAIGT  PA+ V QA YPD+YF+IT SEH TELKEKF+RM DKSMIK RYMYLTEEILKENP++C YMAPSLDARQD+ VVEVP+LGKEAA KAIKEWGQPK+KITHLIFCTTSGVDM GADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQAL
Sbjct:    1 MVSVAEIRKAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKTELKEKFQRMCDKSMIKSRYMYLTEEILKENPSLCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQAL 214          
BLAST of FC876363 vs. ExPASy Swiss-Prot
Match: CHS8_IPOBA (Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DIV PE=2 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 1.039e-101
Identity = 180/214 (84.11%), Postives = 195/214 (91.12%), Query Frame = 1
Query:   58 MATVRESRNAQRADGPATVLAIGTGTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMWDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIEVVEVPKLGKEAATKAIKEWGQPKTKITHLIFCTTSGVDMTGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQAL 699
            M TV E R AQRA+GPAT+LAIGT TPA+ VNQ+ YPDYYFRIT SEH TELKEKF+RM DKSMI KRYM+LTEEILKENP+ C YMAPSLDARQDI VVEVPKLGKEAA  AIKEWGQPK+KITH++FCTTSG+DM GADYQLTKL+GLRPSVKR MMYQQGCFAGGTVLRLAKDLAENNKGARVL+VCSEIT VTFRGP++THLDSLVGQAL
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGIDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSETHLDSLVGQAL 214          
BLAST of FC876363 vs. ExPASy Swiss-Prot
Match: CHS2_SECCE (Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 1.039e-101
Identity = 180/212 (84.91%), Postives = 197/212 (92.92%), Query Frame = 1
Query:   64 TVRESRNAQRADGPATVLAIGTGTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMWDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIEVVEVPKLGKEAATKAIKEWGQPKTKITHLIFCTTSGVDMTGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQAL 699
            TV E R AQRA+GPATVLAIGT TPA+ V QADYPDYYF+ITKS+HM +LKEKFKRM DKS I+KRYM+LTEEIL++NPNMCAYMAPSLDARQDI VVEVPKLGK AA KAIKEWGQP++KITHL+FCTTSGVDM GADYQLTK++GLRPSVKR MMYQQGCFAGGTVLRLAKDLAENN+GARVLVVCSEITAVTFRGP ++HLDSLVGQAL
Sbjct:    6 TVEEVRKAQRAEGPATVLAIGTATPANCVYQADYPDYYFKITKSDHMADLKEKFKRMCDKSQIRKRYMHLTEEILQDNPNMCAYMAPSLDARQDIVVVEVPKLGKAAAQKAIKEWGQPRSKITHLVFCTTSGVDMPGADYQLTKMLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPHESHLDSLVGQAL 217          
BLAST of FC876363 vs. ExPASy Swiss-Prot
Match: CHS1_IPOBA (Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF1 PE=2 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 1.039e-101
Identity = 180/214 (84.11%), Postives = 195/214 (91.12%), Query Frame = 1
Query:   58 MATVRESRNAQRADGPATVLAIGTGTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMWDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIEVVEVPKLGKEAATKAIKEWGQPKTKITHLIFCTTSGVDMTGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQAL 699
            M TV E R AQRA+GPAT+LAIGT TPA+ VNQ+ YPDYYFRIT SEH TELKEKF+RM DKSMI KRYM+LTEEILKENP+ C YMAPSLDARQDI VVEVPKLGKEAA  AIKEWGQPK+KITH++FCTTSG+DM GADYQLTKL+GLRPSVKR MMYQQGCFAGGTVLRLAKDLAENNKGARVL+VCSEIT VTFRGP++THLDSLVGQAL
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGIDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLIVCSEITVVTFRGPSETHLDSLVGQAL 214          
BLAST of FC876363 vs. ExPASy Swiss-Prot
Match: CHSY_CARAN (Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 1.357e-101
Identity = 181/209 (86.60%), Postives = 194/209 (92.82%), Query Frame = 1
Query:   73 ESRNAQRADGPATVLAIGTGTPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMWDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIEVVEVPKLGKEAATKAIKEWGQPKTKITHLIFCTTSGVDMTGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQAL 699
            E R AQRADGPA +LAIGT  PA+ V QA+YPDYYFRIT SEHMT+LKEKFKRM DKS I+KR+M++TEE LKENPNMCAYMAPSLDARQDI VVEVPKLGKEAA KAIKEWGQPK+KITHL+FCTTSGVDM GADYQLTKL+GLRPSVKR MMYQQGCFAGGTVLRLAKDLAENN+GARVLVVCSEITAVTFRGP+DTHLDSLVGQAL
Sbjct:   11 EIRKAQRADGPAGILAIGTANPANYVIQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHVTEEFLKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQAL 219          
The following BLAST results are available for this feature:
BLAST of FC876363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS1_CITSI3.571e-10285.51Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=... [more]
CHS7_SORBI4.665e-10285.38Chalcone synthase 7 OS=Sorghum bicolor GN=CHS7 PE=... [more]
CHS3_SORBI4.665e-10285.38Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=... [more]
CHS3_CAMSI4.665e-10285.98Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 P... [more]
CHSY_RAPSA7.956e-10284.98Chalcone synthase OS=Raphanus sativus GN=CHS PE=2 ... [more]
CHS6_TRISU7.956e-10284.11Chalcone synthase 6 OS=Trifolium subterraneum GN=C... [more]
CHS8_IPOBA1.039e-10184.11Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DI... [more]
CHS2_SECCE1.039e-10184.91Chalcone synthase 2 OS=Secale cereale GN=CHS2 PE=2... [more]
CHS1_IPOBA1.039e-10184.11Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF... [more]
CHSY_CARAN1.357e-10186.60Chalcone synthase OS=Cardamine amara GN=CHS PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionC32003H06EF DevOvary1 Citrus clementina cDNA clone C32003H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876363 ID=FC876363; Name=FC876363; organism=Citrus clementina; type=EST; length=700bp
GAGTGCACACTCACCAAGCACGAGCCACATACATATTCATTAAGGGTTCA
ACTTGAAATGGCAACCGTTCGAGAGAGCAGAAACGCTCAGCGTGCCGACG
GGCCGGCCACCGTCCTCGCCATCGGAACGGGCACGCCTGCCCACAGTGTC
AACCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCA
TATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGGGACAAGTCGATGA
TTAAGAAGCGTTACATGTACTTGACGGAAGAGATTTTGAAGGAAAACCCC
AACATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGA
GGTGGTCGAAGTGCCAAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCA
AAGAATGGGGCCAGCCCAAGACTAAGATCACCCACCTCATCTTCTGCACC
ACCTCCGGGGTCGACATGACCGGAGCCGACTACCAGCTCACCAAACTGAT
CGGTCTGCGCCCCTCCGTCAAGCGCTTCATGATGTACCAACAAGGATGTT
TCGCCGGCGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACAAC
AAGGGCGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACGGCAGTCACTTT
CCGCGGNCCTGCCGATACTCATCTTGATTCTCTTGTGGGCCAGGCTTTGT
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