FC876368 | Citrus Genome Database

Overview


Name	FC876368
Unique Name	FC876368
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	680

Libraries


Library Name	Type
DevOvary1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC876368_ssr35	microsatellite	FC876368_ssr35:35..44.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10339	contig	Ccv1_Contig10339:1..681.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC876368 vs. ExPASy Swiss-Prot
Match: ENOB_RABIT (Beta-enolase OS=Oryctolagus cuniculus GN=ENO3 PE=1 SV=4)

HSP 1 Score: 226.098 bits (575), Expect = 1.182e-61
Identity = 125/180 (69.44%), Postives = 143/180 (79.44%), Query Frame = 2

Query:  110 ARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKK 640
            AR+I DSRGNPTVEVD+ T+ G   RAAVPSGASTGIYEALELRDG  S YLGKGV KAV ++N  +GPAL  K     +Q  +D +M++ LDGT N     K K GANAIL VSLAVCKAGA  K +PLY+HIA+L+GN +LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSF++
Sbjct:    8 AREILDSRGNPTVEVDLHTAKGRF-RAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVEHINKTLGPALLEKKLSVVDQEKVDKFMIE-LDGTEN-----KSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGNHDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFRE 180

HSP 2 Score: 31.9574 bits (71), Expect = 1.182e-61
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = 1

Query:  631 FQEAMKMGVEVYHHLK 678
            F+EAM++G EVYHHLK
Sbjct:  178 FREAMRIGAEVYHHLK 193

[Close]

BLAST of FC876368 vs. ExPASy Swiss-Prot
Match: ENOB_PIG (Beta-enolase OS=Sus scrofa GN=ENO3 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.182e-61
Identity = 125/180 (69.44%), Postives = 143/180 (79.44%), Query Frame = 2

Query:  110 ARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKK 640
            AR+I DSRGNPTVEVD+ T+ G   RAAVPSGASTGIYEALELRDG  S YLGKGV KAV ++N  +GPAL  K     +Q  +D +M++ LDGT N     K K GANAIL VSLAVCKAGA  K +PLY+HIA+L+GN +LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSF++
Sbjct:    8 AREILDSRGNPTVEVDLHTAKGRF-RAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVEHINKTLGPALLEKKLSVVDQEKVDKFMIE-LDGTEN-----KSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGNPDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFRE 180

HSP 2 Score: 31.9574 bits (71), Expect = 1.182e-61
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = 1

Query:  631 FQEAMKMGVEVYHHLK 678
            F+EAM++G EVYHHLK
Sbjct:  178 FREAMRIGAEVYHHLK 193

[Close]

BLAST of FC876368 vs. ExPASy Swiss-Prot
Match: ENOB_MOUSE (Beta-enolase OS=Mus musculus GN=Eno3 PE=1 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.182e-61
Identity = 125/180 (69.44%), Postives = 143/180 (79.44%), Query Frame = 2

Query:  110 ARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKK 640
            AR+I DSRGNPTVEVD+ T+ G   RAAVPSGASTGIYEALELRDG  + YLGKGV KAV ++N  +GPAL  K     +Q  +D +M++ LDGT N     K K GANAIL VSLAVCKAGA  K +PLY+HIA+L+GN +LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFK+
Sbjct:    8 AREILDSRGNPTVEVDLHTAKGRF-RAAVPSGASTGIYEALELRDGDKARYLGKGVLKAVEHINKTLGPALLEKKLSVVDQEKVDKFMIE-LDGTEN-----KSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGNPDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKE 180

HSP 2 Score: 31.9574 bits (71), Expect = 1.182e-61
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = 1

Query:  631 FQEAMKMGVEVYHHLK 678
            F+EAM++G EVYHHLK
Sbjct:  178 FKEAMRIGAEVYHHLK 193

[Close]

BLAST of FC876368 vs. ExPASy Swiss-Prot
Match: ENOB_BOVIN (Beta-enolase OS=Bos taurus GN=ENO3 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.010e-61
Identity = 124/180 (68.89%), Postives = 142/180 (78.89%), Query Frame = 2

Query:  110 ARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKK 640
            AR+I DSRGNPTVEVD+ T+ G   RAAVPSGASTGIYEALELRDG  S YLGKGV KAV ++N  +GPAL  K     +Q  +D +M++ LDGT N     K K GANAIL VSLAVCKAGA  K +PLY+HIA+L+GN  L+LPVPAFNVINGGSHAGNKLAMQEFMILPVGASSF++
Sbjct:    8 AREILDSRGNPTVEVDLHTAKGRF-RAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVEHINKTLGPALLEKKLSVVDQEKVDKFMIE-LDGTEN-----KSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGNPELILPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFRE 180

HSP 2 Score: 31.9574 bits (71), Expect = 2.010e-61
Identity = 12/16 (75.00%), Postives = 15/16 (93.75%), Query Frame = 1

Query:  631 FQEAMKMGVEVYHHLK 678
            F+EAM++G EVYHHLK
Sbjct:  178 FREAMRIGAEVYHHLK 193

[Close]

BLAST of FC876368 vs. ExPASy Swiss-Prot
Match: ENOA_MACFA (Alpha-enolase OS=Macaca fascicularis GN=ENO1 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.417e-61
Identity = 125/187 (66.84%), Postives = 147/187 (78.61%), Query Frame = 2

Query:   89 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKK 640
            ++I  V AR+IFDSRGNPTVEVD+ TS G + RAAVPSGASTGIYEALELRD     Y+GKGVSKAV ++N  I PAL  K  + TEQ  ID  M++ +DGT N     K K GANAIL VSLAVCKAGA  K +PLY+HIA+L+GN  ++LPVPAFNVINGGSHAGNKLAMQEFMILPVGA++F++
Sbjct:    1 MSILKVHAREIFDSRGNPTVEVDLFTSKG-LFRAAVPSGASTGIYEALELRDNDKTRYMGKGVSKAVEHINKTIAPALVSKKLNVTEQEKIDKLMIE-MDGTEN-----KSKFGANAILGVSLAVCKAGAVEKGVPLYRHIADLAGNSEVILPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFRE 180

HSP 2 Score: 29.261 bits (64), Expect = 3.417e-61
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = 1

Query:  631 FQEAMKMGVEVYHHLK 678
            F+EAM++G EVYH+LK
Sbjct:  178 FREAMRIGAEVYHNLK 193

[Close]

BLAST of FC876368 vs. ExPASy Swiss-Prot
Match: ENOA_PONAB (Alpha-enolase OS=Pongo abelii GN=ENO1 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 4.456e-61
Identity = 124/187 (66.31%), Postives = 147/187 (78.61%), Query Frame = 2

Query:   89 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKK 640
            ++I  + AR+IFDSRGNPTVEVD+ TS G + RAAVPSGASTGIYEALELRD     Y+GKGVSKAV ++N  I PAL  K  + TEQ  ID  M++ +DGT N     K K GANAIL VSLAVCKAGA  K +PLY+HIA+L+GN  ++LPVPAFNVINGGSHAGNKLAMQEFMILPVGA++F++
Sbjct:    1 MSILKIHAREIFDSRGNPTVEVDLFTSKG-LFRAAVPSGASTGIYEALELRDNDKTRYMGKGVSKAVEHINKTIAPALVSKKLNVTEQEKIDKLMIE-MDGTEN-----KSKFGANAILGVSLAVCKAGAVEKGVPLYRHIADLAGNSEVILPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFRE 180

HSP 2 Score: 29.261 bits (64), Expect = 4.456e-61
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = 1

Query:  631 FQEAMKMGVEVYHHLK 678
            F+EAM++G EVYH+LK
Sbjct:  178 FREAMRIGAEVYHNLK 193

[Close]

BLAST of FC876368 vs. ExPASy Swiss-Prot
Match: ENOA_HUMAN (Alpha-enolase OS=Homo sapiens GN=ENO1 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 4.456e-61
Identity = 124/187 (66.31%), Postives = 147/187 (78.61%), Query Frame = 2

Query:   89 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKK 640
            ++I  + AR+IFDSRGNPTVEVD+ TS G + RAAVPSGASTGIYEALELRD     Y+GKGVSKAV ++N  I PAL  K  + TEQ  ID  M++ +DGT N     K K GANAIL VSLAVCKAGA  K +PLY+HIA+L+GN  ++LPVPAFNVINGGSHAGNKLAMQEFMILPVGA++F++
Sbjct:    1 MSILKIHAREIFDSRGNPTVEVDLFTSKG-LFRAAVPSGASTGIYEALELRDNDKTRYMGKGVSKAVEHINKTIAPALVSKKLNVTEQEKIDKLMIE-MDGTEN-----KSKFGANAILGVSLAVCKAGAVEKGVPLYRHIADLAGNSEVILPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFRE 180

HSP 2 Score: 29.261 bits (64), Expect = 4.456e-61
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = 1

Query:  631 FQEAMKMGVEVYHHLK 678
            F+EAM++G EVYH+LK
Sbjct:  178 FREAMRIGAEVYHNLK 193

[Close]

BLAST of FC876368 vs. ExPASy Swiss-Prot
Match: ENO_PLAYO (Enolase OS=Plasmodium yoelii yoelii GN=ENO PE=3 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 7.574e-61
Identity = 118/181 (65.19%), Postives = 141/181 (77.90%), Query Frame = 2

Query:  119 IFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG--NKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKKP*RW 652
            IF SRGNPTVEVD+ T+ G + RAAVPSGASTGIYEALELRD   S YLGKGV +A+ N+N II P L G D  EQ  IDN MVQ+LDG+  EWGW K KLGANAILA+S+A+C+AGA   K  LYK++A+L+G   + ++LPVP  NVINGGSHAGNKL+ QEFMI+PVGA SFK+  R+
Sbjct:   11 IFYSRGNPTVEVDLETTLG-IFRAAVPSGASTGIYEALELRDNDKSRYLGKGVQQAIKNINEIIAPKLIGLDCREQKKIDNMMVQELDGSKTEWGWSKSKLGANAILAISMAICRAGAAANKTSLYKYVAQLAGKNTEKMILPVPCLNVINGGSHAGNKLSFQEFMIVPVGAPSFKEAMRY 190

HSP 2 Score: 27.335 bits (59), Expect = 7.574e-61
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 1

Query:  631 FQEAMKMGVEVYHHLK 678
            F+EAM+ G EVYH LK
Sbjct:  184 FKEAMRYGAEVYHTLK 199

[Close]

BLAST of FC876368 vs. ExPASy Swiss-Prot
Match: ENOA_PYTRG (Alpha-enolase OS=Python regius PE=2 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 1.679e-60
Identity = 123/187 (65.78%), Postives = 146/187 (78.07%), Query Frame = 2

Query:   89 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPT--EQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKK 640
            ++I  ++AR+IFDSRGNPT+EVD+ T  G + RAAVPSGASTGIYEALELRD     +LGKGVSKAV +VN  I PAL  K+ +  EQ  ID  M++ +DG+ N     K K GANAIL VSLAVCKAGA  K IPLY+HIA+L+GNK ++LPVPAFNVINGGSHAGNKLAMQEFMILP+GA  FK+
Sbjct:    1 MSILKIQAREIFDSRGNPTIEVDLYTKKG-LFRAAVPSGASTGIYEALELRDNDKTRFLGKGVSKAVEHVNKTIAPALVNKNVSVVEQEKIDKLMIE-MDGSEN-----KSKFGANAILGVSLAVCKAGAAEKDIPLYRHIADLAGNKEVILPVPAFNVINGGSHAGNKLAMQEFMILPIGAECFKE 180

HSP 2 Score: 29.261 bits (64), Expect = 1.679e-60
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = 1

Query:  631 FQEAMKMGVEVYHHLK 678
            F+EAM++G EVYH+LK
Sbjct:  178 FKEAMRIGAEVYHNLK 193

[Close]

BLAST of FC876368 vs. ExPASy Swiss-Prot
Match: ENOA_CHICK (Alpha-enolase OS=Gallus gallus GN=ENO1 PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 2.189e-60
Identity = 125/187 (66.84%), Postives = 145/187 (77.54%), Query Frame = 2

Query:   89 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPT--EQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKK 640
            ++I  + AR+IFDSRGNPTVEVD+ T+ G + RAAVPSGASTGIYEALELRD     YLGKGVSKAV +VN  I PAL  K+    EQ  ID  M++ +DGT N     K K GANAIL VSLAVCKAGA  K +PLY+HIA+L+GN  ++LPVPAFNVINGGSHAGNKLAMQEFMILPVGA +FK+
Sbjct:    1 MSILKIHAREIFDSRGNPTVEVDLYTNKG-LFRAAVPSGASTGIYEALELRDNDKTRYLGKGVSKAVEHVNKTIAPALISKNVNVVEQEKIDKLMLE-MDGTEN-----KSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGNPEVILPVPAFNVINGGSHAGNKLAMQEFMILPVGADTFKE 180

HSP 2 Score: 29.261 bits (64), Expect = 2.189e-60
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = 1

Query:  631 FQEAMKMGVEVYHHLK 678
            F+EAM++G EVYH+LK
Sbjct:  178 FKEAMRIGAEVYHNLK 193

The following BLAST results are available for this feature:

BLAST of FC876368 vs. ExPASy Swiss-Prot

BLAST of FC876368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ENOB_RABIT	1.182e-61	69.44	Beta-enolase OS=Oryctolagus cuniculus GN=ENO3 PE=1...	[more]
ENOB_PIG	1.182e-61	69.44	Beta-enolase OS=Sus scrofa GN=ENO3 PE=2 SV=1	[more]
ENOB_MOUSE	1.182e-61	69.44	Beta-enolase OS=Mus musculus GN=Eno3 PE=1 SV=3	[more]
ENOB_BOVIN	2.010e-61	68.89	Beta-enolase OS=Bos taurus GN=ENO3 PE=2 SV=1	[more]
ENOA_MACFA	3.417e-61	66.84	Alpha-enolase OS=Macaca fascicularis GN=ENO1 PE=2 ...	[more]
ENOA_PONAB	4.456e-61	66.31	Alpha-enolase OS=Pongo abelii GN=ENO1 PE=2 SV=1	[more]
ENOA_HUMAN	4.456e-61	66.31	Alpha-enolase OS=Homo sapiens GN=ENO1 PE=1 SV=2	[more]
ENO_PLAYO	7.574e-61	65.19	Enolase OS=Plasmodium yoelii yoelii GN=ENO PE=3 SV...	[more]
ENOA_PYTRG	1.679e-60	65.78	Alpha-enolase OS=Python regius PE=2 SV=3	[more]
ENOA_CHICK	2.189e-60	66.84	Alpha-enolase OS=Gallus gallus GN=ENO1 PE=2 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	C32003H12EF DevOvary1 Citrus clementina cDNA clone C32003H12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC876368 ID=FC876368; Name=FC876368; organism=Citrus clementina; type=EST; length=680bp
GACTTAATCACAAGGCTCTTGTCGCACTCACAGACTCTCTCTCTCGTTCT
AGATCTTTCTTCGCTTTTCCAGCTTTCAGAAAATGGCAATAACCATCACT
GCCGTCAAAGCCAGGCAGATCTTTGACAGCCGTGGAAATCCAACGGTGGA
GGTCGACGTGACAACATCAGATGGCCACGTGGCTAGAGCTGCTGTTCCAA
GCGGTGCATCCACCGGAATTTATGAGGCGCTTGAACTAAGAGACGGAGGC
TCTGATTACCTAGGCAAGGGTGTATCGAAGGCTGTTAGCAATGTCAACGC
CATCATTGGCCCTGCACTCGCTGGCAAGGACCCAACTGAGCAGACTGCTA
TTGACAACTATATGGTACAACAACTTGATGGAACTGTAAATGAGTGGGGT
TGGTGCAAACAGAAGCTTGGAGCAAACGCCATTTTGGCTGTCTCCCTAGC
TGTCTGCAAGGCTGGTGCACATGTCAAGAAGATTCCTCTTTACAAGCATA
TTGCCGAACTCTCTGGTAACAAGAATTTGGTGTTGCCAGTGCCAGCATTC
AATGTCATTAATGGTGGATCACATGCTGGAAACAAACTTGCTATGCAGGA
GTTTATGATTCTTCCTGTAGGAGCTTCCTCTTTCAAGAAGCCATGAAGAT
GGGTGTAGAAGTATATCACCATCTGAAGGC