FC876373

Overview
NameFC876373
Unique NameFC876373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14593 contig Ccv1_Contig14593:51..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC5_HUMAN (Chloride intracellular channel protein 5 OS=Homo sapiens GN=CLIC5 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.766e-12
Identity = 55/219 (25.11%), Postives = 100/219 (45.66%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKA 653
            + + VKA +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D +     +E     EKYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + LK LD++L T                    F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y K  +A + F  T A
Sbjct:  175 IYLFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALKKLDDYLNTPLPEEIDANTCGEDKGSRRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCA 391          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC5_BOVIN (Chloride intracellular channel protein 5 OS=Bos taurus GN=CLIC5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12
Identity = 55/220 (25.00%), Postives = 98/220 (44.55%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT-----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKA 653
            + + VKA +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D +     +E     EKYP  +  +  E  + G  IF  F  ++K+  +  N   E+ L + LK LD++L T                     F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y K  +A + F  T A
Sbjct:  201 INLFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPRLAAKH-RESNTAGIDIFVKFSAYIKNTKQQSNAALERGLTKALKKLDDYLNTPLPEEIDADTRGDDEKGSRRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDFPAEMTGLWRYLKNAYARDEFTNTCA 418          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: GSTO1_RAT (Glutathione S-transferase omega-1 OS=Rattus norvegicus GN=Gsto1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 48/158 (30.38%), Postives = 82/158 (51.90%), Query Frame = 3
Query:  117 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVK-FDDKWVADSDVTVRIIEEKYPEPSL--TNPPEFA------SVGSKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALE 557
            CPF+QR L+ L+ K + ++   IN+ +KP+WF E +P G VPV++      + +S +T   ++E YPE  L   +P E A       + SK+     +F+++K   D  G ++ L +E   L+E +      F  G  ++ +D  + P    L+ ALE
Sbjct:   32 CPFAQRTLMVLKAKGIRHEIININLKNKPEWFFEKNPFGLVPVLENTQGHLITESVITCEYLDEAYPEKKLFPDDPYEKACQKMTFELFSKVPSLVTSFIRAKRKEDHPGIKEELKKEFSKLEEAMANKRTAFFGGNSLSMIDYLIWPWFQRLE-ALE 188          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: GSTO1_PIG (Glutathione S-transferase omega-1 OS=Sus scrofa GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 47/158 (29.75%), Postives = 82/158 (51.90%), Query Frame = 3
Query:  117 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVK-FDDKWVADSDVTVRIIEEKYPEPSL--TNPPEFA------SVGSKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALE 557
            CPF+QR LL L  K + ++   IN+ +KP+WF + +P G VPV++    + + +S +T   ++E YP   L   +P E A       + SK+ P  + F++ ++  D  G ++ L +E   L+E L      +  G  ++ +D  + P    L+ ALE
Sbjct:   32 CPFAQRTLLVLNAKGIRHQVININLKNKPEWFFQKNPSGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMVFELSSKVPPLLIRFIRRENEADCSGLKEELRKEFSKLEEVLTKKKTTYFGGSSLSMIDYLIWPWFERLE-ALE 188          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC3_HUMAN (Chloride intracellular channel protein 3 OS=Homo sapiens GN=CLIC3 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 59/220 (26.82%), Postives = 99/220 (45.00%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEEKYPEPSLTNPPEFASV----------GSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKTH------GGP--------FIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            +++ VKA+     + G CP  QR  + L  K VP+    ++    P    + +P  ++P++ +D     D   T++I  E + E +L  PP+F S+          G+ +F  F  F+K+  P  ++   Q LL  L  LD +L+        G P        F+ G+++T  D SL PKL+ +     HF+Q  +P  L  V  Y       + F+ T
Sbjct:    6 LQLFVKASEDGESV-GHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQLPILLYDSDAKTD---TLQI--EDFLEETL-GPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPAQDEALYQQLLRALARLDSYLRAPLEHELAGEPQLRESRRRFLDGDRLTLADCSLLPKLHIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYT 218          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC3_MOUSE (Chloride intracellular channel protein 3 OS=Mus musculus GN=Clic3 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 58/220 (26.36%), Postives = 97/220 (44.09%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEEKYPEPSLTNPPEFASV----------GSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDE--------------HLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            +++ VKA+     + G CP  QR  + L  K VP+    ++         + +P  ++P++ +D     D   T++I  E++ E +L  PP+F S+          G+ IF  F  F+K+  P  ++   Q LL  L  LD               HL+     F+ G++ T  D SL PKL+ +     HF+Q  +P  L+ V  Y       + F+ T
Sbjct:    7 LQLFVKASEDGESV-GHCPSCQRLFMVLLLKGVPFTLTTVDTRRALDVLKDFAPGSQLPILLYDGDVKTD---TLQI--EEFLEETL-GPPDFPSLAPRYRESNTAGNDIFHKFSAFIKNPVPTQDNALYQQLLRALTRLDSYLRAPLDHELAQEPHLRESHRRFLDGDQFTLADCSLLPKLHIVDTVCAHFRQLPIPAELSCVRRYLDSALQKKEFKYT 219          
The following BLAST results are available for this feature:
BLAST of FC876373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CLIC5_HUMAN1.766e-1225.11Chloride intracellular channel protein 5 OS=Homo s... [more]
CLIC5_BOVIN5.140e-1225.00Chloride intracellular channel protein 5 OS=Bos ta... [more]
GSTO1_RAT6.712e-1230.38Glutathione S-transferase omega-1 OS=Rattus norveg... [more]
GSTO1_PIG6.712e-1229.75Glutathione S-transferase omega-1 OS=Sus scrofa GN... [more]
CLIC3_HUMAN6.712e-1226.82Chloride intracellular channel protein 3 OS=Homo s... [more]
CLIC3_MOUSE9.693e-1126.36Chloride intracellular channel protein 3 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionC32004A06EF DevOvary1 Citrus clementina cDNA clone C32004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876373 ID=FC876373; Name=FC876373; organism=Citrus clementina; type=EST; length=653bp
GGTTGTCGGGTTTTCACTAACAGCAACATACACTCTCTCTGATCACTCAA
TTCCGCAAAATGGCCGTGGAGATTTGTGTGAAAGCCGCTGTTGGCGCTCC
TGATATTCTCGGGGACTGCCCATTTTCCCAAAGAGCTTTGCTTACTTTGG
AGGAAAAGAAAGTTCCATACAAGCGTCACCTCATCAATATCAGTGACAAG
CCTCAATGGTTTTTGGAGATAAGCCCAGAAGGGAAAGTACCTGTGGTAAA
GTTTGATGACAAGTGGGTGGCTGACTCTGATGTGACTGTTAGAATTATTG
AGGAGAAGTATCCTGAGCCTTCTCTTACTAATCCTCCTGAATTTGCCTCT
GTTGGATCAAAGATATTCCCATCTTTTGTCAATTTCTTGAAGAGCAAGGA
CCCAAATGATGGGACAGAGCAAGCTTTGCTGGAGGAATTGAAAGCATTGG
ATGAGCATCTTAAGACTCATGGAGGTCCATTCATTGCTGGAGAGAAGGTC
ACTGCTGTAGATTTGAGCTTGGCACCAAAGCTGTACCACCTTCAGGTAGC
TCTTGAACATTTCAAGCAGTGGACTGTCCCTGAGAGCTTGGCTCATGTCC
ATGGGTACACGAAGAAGCTTTTTGCTCTGGAATCCTTTCAGAAGACTAAG
GCT
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