FC876375

Overview
NameFC876375
Unique NameFC876375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876375_ssr350 microsatellite FC876375_ssr350:350..364. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_DROME (Ornithine aminotransferase, mitochondrial OS=Drosophila melanogaster GN=Oat PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.834e-26
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 1
Query:  385 EYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            E +Y AHNYHP+P+  ++ +G  +WD EG +Y D+LSAYSAVNQGHCHPKI+ AL  QA KL L+SRAFY+D    + E +T +FG+D V
Sbjct:   41 ENKYGAHNYHPLPVALTKGEGVFVWDVEGKRYFDYLSAYSAVNQGHCHPKIVAALTAQASKLALTSRAFYSDVLGEYEEYVTKLFGFDKV 130          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_CAEEL (Probable ornithine aminotransferase, mitochondrial OS=Caenorhabditis elegans GN=C16A3.10 PE=2 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 8.245e-26
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            + + E ++  HNY P+P+  S+ +G  +WD EG KY DFL+AYSAVNQGHCHPK++K +QEQA  LTL+SRAFYN+    + E +T +F YD V
Sbjct:   24 IFDREKKFGCHNYKPLPVALSKGEGCFVWDVEGKKYFDFLAAYSAVNQGHCHPKLLKVVQEQASTLTLTSRAFYNNVLGEYEEYVTKLFKYDKV 117          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_RAT (Ornithine aminotransferase, mitochondrial OS=Rattus norvegicus GN=Oat PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.406e-25
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 1
Query:  385 EYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            E +Y AHNYHP+P+   + KG  +WD EG +Y DFLSAY AV+QGHCHPKI++A++ Q +KLTL+SRAFYN+    + E +T +F Y+ V
Sbjct:   47 ESKYGAHNYHPLPVALERGKGIYMWDVEGRQYFDFLSAYGAVSQGHCHPKIIEAMKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYNKV 136          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_GEOSW (Ornithine aminotransferase OS=Geobacillus sp. (strain WCH70) GN=rocD PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.837e-25
Identity = 51/94 (54.26%), Postives = 75/94 (79.79%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +I L  +Y A+NYHP+P+V ++ +G  + DPEGN+Y+D LSAYSAVNQGH HPKI++AL+EQA+++TL+SRAF+ND+   + E++  + G DMV
Sbjct:    7 IIRLTEQYGANNYHPLPVVLTKGEGVWVEDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKEQADRITLTSRAFHNDQLGPWYEKVAKLTGKDMV 100          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_MOUSE (Ornithine aminotransferase, mitochondrial OS=Mus musculus GN=Oat PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.399e-25
Identity = 49/90 (54.44%), Postives = 66/90 (73.33%), Query Frame = 1
Query:  385 EYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            E +Y AHNYHP+P+   + KG  +WD EG +Y DFLSAY AV+QGHCHPKI+ A++ Q +KLTL+SRAFYN+    + E +T +F Y+ V
Sbjct:   47 ESKYGAHNYHPLPVALERGKGIYMWDVEGRQYFDFLSAYGAVSQGHCHPKIIDAMKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYNKV 136          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_BACSU (Ornithine aminotransferase OS=Bacillus subtilis GN=rocD PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.399e-25
Identity = 52/94 (55.32%), Postives = 74/94 (78.72%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +I+    Y A+NYHP+PIV S+A G+ + DPEGN+Y+D LSAYSAVNQGH HPKI++AL++QA+K+TL+SRAF+ND+   F E+   + G +M+
Sbjct:   10 IIDQTSHYGANNYHPLPIVISEALGAWVKDPEGNEYMDMLSAYSAVNQGHRHPKIIQALKDQADKITLTSRAFHNDQLGPFYEKTAKLTGKEMI 103          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_MACCJ (Ornithine aminotransferase OS=Macrococcus caseolyticus (strain JCSC5402) GN=rocD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.980e-25
Identity = 52/94 (55.32%), Postives = 74/94 (78.72%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +I +   Y A NYHP+PIV S+A+G  + DPEGNKY+D LSAYSAVNQGH HPKI++AL+EQA+++TL+SRAF++D+   + E++  + G +MV
Sbjct:    7 IIEITNHYGAPNYHPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKEQADRVTLTSRAFHSDQLGPWYEKICKLAGKEMV 100          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_PLAFD (Ornithine aminotransferase OS=Plasmodium falciparum (isolate CDC / Honduras) GN=OAT PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.464e-24
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  376 INLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +N E  Y AHNY P+P+V  + KG  ++D E  +Y DFLSAYS+VNQGHCHP I+ A+  QA+KLT+ SRAF++D   V    LT++FGYD V
Sbjct:   14 MNNELTYGAHNYDPIPVVLKRGKGVFVYDIEDRRYYDFLSAYSSVNQGHCHPDILNAMINQAKKLTICSRAFFSDSLGVCERYLTNLFGYDKV 106          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_PLAF7 (Ornithine aminotransferase OS=Plasmodium falciparum (isolate 3D7) GN=OAT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.464e-24
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  376 INLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +N E  Y AHNY P+P+V  + KG  ++D E  +Y DFLSAYS+VNQGHCHP I+ A+  QA+KLT+ SRAF++D   V    LT++FGYD V
Sbjct:   14 MNNELTYGAHNYDPIPVVLKRGKGVFVYDIEDRRYYDFLSAYSSVNQGHCHPDILNAMINQAKKLTICSRAFFSDSLGVCERYLTNLFGYDKV 106          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT2_STAAW (Ornithine aminotransferase 2 OS=Staphylococcus aureus (strain MW2) GN=rocD2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.909e-24
Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD 648
            +I L   Y AHNY P+PIV S+A+G  + DPEGNKY+D LSAYSAVNQGH HPKI++AL++QA+K+TL SRAF++D    + E++  + G D
Sbjct:    7 IIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKD 98          
The following BLAST results are available for this feature:
BLAST of FC876375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
OAT_DROME2.834e-2656.67Ornithine aminotransferase, mitochondrial OS=Droso... [more]
OAT_CAEEL8.245e-2653.19Probable ornithine aminotransferase, mitochondrial... [more]
OAT_RAT1.406e-2554.44Ornithine aminotransferase, mitochondrial OS=Rattu... [more]
OAT_GEOSW1.837e-2554.26Ornithine aminotransferase OS=Geobacillus sp. (str... [more]
OAT_MOUSE2.399e-2554.44Ornithine aminotransferase, mitochondrial OS=Mus m... [more]
OAT_BACSU2.399e-2555.32Ornithine aminotransferase OS=Bacillus subtilis GN... [more]
OAT_MACCJ6.980e-2555.32Ornithine aminotransferase OS=Macrococcus caseolyt... [more]
OAT_PLAFD3.464e-2453.76Ornithine aminotransferase OS=Plasmodium falciparu... [more]
OAT_PLAF73.464e-2453.76Ornithine aminotransferase OS=Plasmodium falciparu... [more]
OAT2_STAAW5.909e-2456.52Ornithine aminotransferase 2 OS=Staphylococcus aur... [more]

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Properties
Property NameValue
Genbank descriptionC32004A08EF DevOvary1 Citrus clementina cDNA clone C32004A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876375 ID=FC876375; Name=FC876375; organism=Citrus clementina; type=EST; length=655bp
GGCATTGGGGATTGGTTCACTGAGTTGAATGAATGGGAATGGATTTTTGC
TTTGGGACGTGTACCTTTACGGCAACCATGACGTAAAAGTCGTAAGCTAA
ACGGAACATAACAAAAACAAATATGGAAATTTGACGTCCTGCTTTCGTTC
TTATCTATCATTAGCACACTTCAACGTTGGGTTATCCTAGGATCCAACTG
AACGTAATTAGATTGGATTATCAAAAATTACAGTGATATTATTGTTATTA
TGAATTCAATGGGTGCAACAAGAAGAAATTTGCATTGCTTATTGAGCAGA
GTATGCAGGAAGAGAAGTTATGGTGCTCAACCTCAAGGAGGCACTTCTCC
TTCTTCTTCTTCTTCTCAACAACTCATCAATTTGGAGTATGAATACAGTG
CCCACAATTACCACCCAGTTCCGATTGTATTCTCTCAAGCAAAAGGGTCA
TCCATATGGGATCCAGAGGGCAATAAATATCTGGATTTTCTCTCAGCTTA
CTCTGCAGTTAATCAGGGACATTGTCATCCAAAAATCATGAAAGCATTAC
AAGAGCAGGCAGAAAAGCTTACTCTCAGCTCTAGAGCCTTCTATAATGAT
AAATTTCCAGTATTTGCAGAGCGTCTTACAAGCATGTTTGGGTATGATAT
GGTAC
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