FC876375

Overview
NameFC876375
Unique NameFC876375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876375_ssr350 microsatellite FC876375_ssr350:350..364. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT2_STAAS (Ornithine aminotransferase 2 OS=Staphylococcus aureus (strain MSSA476) GN=rocD2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.909e-24
Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD 648
            +I L   Y AHNY P+PIV S+A+G  + DPEGNKY+D LSAYSAVNQGH HPKI++AL++QA+K+TL SRAF++D    + E++  + G D
Sbjct:    7 IIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKD 98          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT2_STAAR (Ornithine aminotransferase 2 OS=Staphylococcus aureus (strain MRSA252) GN=rocD2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.909e-24
Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD 648
            +I L   Y AHNY P+PIV S+A+G  + DPEGNKY+D LSAYSAVNQGH HPKI++AL++QA+K+TL SRAF++D    + E++  + G D
Sbjct:    7 IIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKD 98          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT2_STAAN (Ornithine aminotransferase 2 OS=Staphylococcus aureus (strain N315) GN=rocD2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.909e-24
Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD 648
            +I L   Y AHNY P+PIV S+A+G  + DPEGNKY+D LSAYSAVNQGH HPKI++AL++QA+K+TL SRAF++D    + E++  + G D
Sbjct:    7 IIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKD 98          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT2_STAAM (Ornithine aminotransferase 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rocD2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.909e-24
Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD 648
            +I L   Y AHNY P+PIV S+A+G  + DPEGNKY+D LSAYSAVNQGH HPKI++AL++QA+K+TL SRAF++D    + E++  + G D
Sbjct:    7 IIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKD 98          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT2_STAAC (Ornithine aminotransferase 2 OS=Staphylococcus aureus (strain COL) GN=rocD2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.909e-24
Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD 648
            +I L   Y AHNY P+PIV S+A+G  + DPEGNKY+D LSAYSAVNQGH HPKI++AL++QA+K+TL SRAF++D    + E++  + G D
Sbjct:    7 IIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKD 98          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_STAES (Ornithine aminotransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rocD PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23
Identity = 51/92 (55.43%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD 648
            +INL   Y AHNY P+PIV S+A+G  + DPEGN Y+D LSAYSAVNQGH HP+I++AL++QA+K+TL SRAF++D    + E++  + G D
Sbjct:    7 IINLTNHYGAHNYVPLPIVISEAEGVWVKDPEGNTYMDMLSAYSAVNQGHRHPRIIQALKDQADKVTLVSRAFHSDNLGQWHEKICKLAGKD 98          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_STAEQ (Ornithine aminotransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rocD PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.316e-23
Identity = 51/92 (55.43%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD 648
            +INL   Y AHNY P+PIV S+A+G  + DPEGN Y+D LSAYSAVNQGH HP+I++AL++QA+K+TL SRAF++D    + E++  + G D
Sbjct:    7 IINLTNHYGAHNYVPLPIVISEAEGVWVKDPEGNTYMDMLSAYSAVNQGHRHPRIIQALKDQADKVTLVSRAFHSDNLGQWYEKICKLAGKD 98          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_OCEIH (Ornithine aminotransferase OS=Oceanobacillus iheyensis GN=rocD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.933e-23
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 1
Query:  394 YSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            Y AHNYHP+PIV S+A G  + DPEGN Y+D LSAYSAVNQGH HPKI++AL+ QA+K+TL+SRAF+N+    + +R+  +   D V
Sbjct:   15 YGAHNYHPLPIVVSEANGVWVKDPEGNSYMDMLSAYSAVNQGHRHPKIIEALKNQADKVTLTSRAFHNELLGPWTKRMAKLTKKDKV 101          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_BRAJA (Ornithine aminotransferase OS=Bradyrhizobium japonicum GN=rocD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.533e-23
Identity = 47/86 (54.65%), Postives = 64/86 (74.42%), Query Frame = 1
Query:  385 EYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG 642
            E    AHNY P+ +V S+ +G  +WD +GN+YLD LSAYSAV+QGHCHPKI+ A+ EQA +LTL+SRAF+ND+   F E + ++ G
Sbjct:   12 ETRLGAHNYEPIGVVLSRGEGVWVWDTDGNRYLDCLSAYSAVSQGHCHPKILAAMVEQAHRLTLTSRAFHNDQLAPFYEEIAALTG 97          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_BACCR (Ornithine aminotransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rocD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.533e-23
Identity = 50/94 (53.19%), Postives = 71/94 (75.53%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +I L   Y A+NYHP+PIV S+A+G  + DPEGN+Y+D LSAYSAVNQGH HPKI+ AL +QA ++TL+SRAF++D+   + E++  +   +MV
Sbjct:    7 IIELTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMV 100          
The following BLAST results are available for this feature:
BLAST of FC876375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
OAT2_STAAS5.909e-2456.52Ornithine aminotransferase 2 OS=Staphylococcus aur... [more]
OAT2_STAAR5.909e-2456.52Ornithine aminotransferase 2 OS=Staphylococcus aur... [more]
OAT2_STAAN5.909e-2456.52Ornithine aminotransferase 2 OS=Staphylococcus aur... [more]
OAT2_STAAM5.909e-2456.52Ornithine aminotransferase 2 OS=Staphylococcus aur... [more]
OAT2_STAAC5.909e-2456.52Ornithine aminotransferase 2 OS=Staphylococcus aur... [more]
OAT_STAES1.316e-2355.43Ornithine aminotransferase OS=Staphylococcus epide... [more]
OAT_STAEQ1.316e-2355.43Ornithine aminotransferase OS=Staphylococcus epide... [more]
OAT_OCEIH2.933e-2357.47Ornithine aminotransferase OS=Oceanobacillus iheye... [more]
OAT_BRAJA6.533e-2354.65Ornithine aminotransferase OS=Bradyrhizobium japon... [more]
OAT_BACCR6.533e-2353.19Ornithine aminotransferase OS=Bacillus cereus (str... [more]

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Properties
Property NameValue
Genbank descriptionC32004A08EF DevOvary1 Citrus clementina cDNA clone C32004A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876375 ID=FC876375; Name=FC876375; organism=Citrus clementina; type=EST; length=655bp
GGCATTGGGGATTGGTTCACTGAGTTGAATGAATGGGAATGGATTTTTGC
TTTGGGACGTGTACCTTTACGGCAACCATGACGTAAAAGTCGTAAGCTAA
ACGGAACATAACAAAAACAAATATGGAAATTTGACGTCCTGCTTTCGTTC
TTATCTATCATTAGCACACTTCAACGTTGGGTTATCCTAGGATCCAACTG
AACGTAATTAGATTGGATTATCAAAAATTACAGTGATATTATTGTTATTA
TGAATTCAATGGGTGCAACAAGAAGAAATTTGCATTGCTTATTGAGCAGA
GTATGCAGGAAGAGAAGTTATGGTGCTCAACCTCAAGGAGGCACTTCTCC
TTCTTCTTCTTCTTCTCAACAACTCATCAATTTGGAGTATGAATACAGTG
CCCACAATTACCACCCAGTTCCGATTGTATTCTCTCAAGCAAAAGGGTCA
TCCATATGGGATCCAGAGGGCAATAAATATCTGGATTTTCTCTCAGCTTA
CTCTGCAGTTAATCAGGGACATTGTCATCCAAAAATCATGAAAGCATTAC
AAGAGCAGGCAGAAAAGCTTACTCTCAGCTCTAGAGCCTTCTATAATGAT
AAATTTCCAGTATTTGCAGAGCGTCTTACAAGCATGTTTGGGTATGATAT
GGTAC
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