FC876375

Overview
NameFC876375
Unique NameFC876375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876375_ssr350 microsatellite FC876375_ssr350:350..364. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_BORPE (Ornithine aminotransferase OS=Bordetella pertussis GN=rocD PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.569e-19
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  382 LEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG 642
            +E E  AHNY P+ +V ++  G  ++D  G +YLD LSAYSAVNQGHCHP+I+ A+ EQA++LTL+SRAF +D+     E L  + G
Sbjct:   12 IEDELGAHNYQPLDVVLARGSGVWLYDTAGRRYLDCLSAYSAVNQGHCHPRILAAMVEQAQRLTLTSRAFRHDQLAPLYEDLARLTG 98          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_BORPA (Ornithine aminotransferase OS=Bordetella parapertussis GN=rocD PE=3 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.569e-19
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  382 LEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG 642
            +E E  AHNY P+ +V ++  G  ++D  G +YLD LSAYSAVNQGHCHP+I+ A+ EQA++LTL+SRAF +D+     E L  + G
Sbjct:   12 IEDELGAHNYQPLDVVLARGSGVWLYDTAGRRYLDCLSAYSAVNQGHCHPRILAAMVEQAQRLTLTSRAFRHDQLAPLYEDLARLTG 98          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT_BORBR (Ornithine aminotransferase OS=Bordetella bronchiseptica GN=rocD PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.569e-19
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  382 LEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG 642
            +E E  AHNY P+ +V ++  G  ++D  G +YLD LSAYSAVNQGHCHP+I+ A+ EQA++LTL+SRAF +D+     E L  + G
Sbjct:   12 IEDELGAHNYQPLDVVLARGSGVWLYDTAGRRYLDCLSAYSAVNQGHCHPRILAAMVEQAQRLTLTSRAFRHDQLAPLYEDLARLTG 98          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT1_STAS1 (Ornithine aminotransferase 1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rocD1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.275e-18
Identity = 37/82 (45.12%), Postives = 60/82 (73.17%), Query Frame = 1
Query:  391 EYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSM 636
            +YS+ NY P+ +  ++ +G+ +WD E N Y+D +S +S VNQGHCHPKI+KALQEQ++++T+ SRA Y+D    + E++  +
Sbjct:   10 KYSSKNYSPLKLALAKGRGAKVWDIEDNCYIDCISGFSVVNQGHCHPKIIKALQEQSQRITMVSRALYSDNLGKWEEKICKL 91          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT1_STAAW (Ornithine aminotransferase 1 OS=Staphylococcus aureus (strain MW2) GN=rocD1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 40/94 (42.55%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +I L   YS++NY P+ +V S+ KG  +WD +G +Y+D +S +S  NQGHCHP I+KA+ EQA KL++ SR  Y+D    + E++  +   D V
Sbjct:    4 IIELTDYYSSNNYAPLKLVISKGKGVKVWDTDGKQYIDCISGFSVANQGHCHPTIVKAMTEQASKLSIISRVLYSDNLGKWEEKICHLAKKDKV 97          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT1_STAAS (Ornithine aminotransferase 1 OS=Staphylococcus aureus (strain MSSA476) GN=rocD1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 40/94 (42.55%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +I L   YS++NY P+ +V S+ KG  +WD +G +Y+D +S +S  NQGHCHP I+KA+ EQA KL++ SR  Y+D    + E++  +   D V
Sbjct:    4 IIELTDYYSSNNYAPLKLVISKGKGVKVWDTDGKQYIDCISGFSVANQGHCHPTIVKAMTEQASKLSIISRVLYSDNLGKWEEKICHLAKKDKV 97          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT1_STAAR (Ornithine aminotransferase 1 OS=Staphylococcus aureus (strain MRSA252) GN=rocD1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 39/94 (41.49%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +I L   YS++NY P+ +V ++ KG  +WD +G +Y+D +S +S  NQGHCHP I+KA+ EQA KL++ SR  Y+D    + E++  +   D V
Sbjct:    4 IIELTDYYSSNNYAPLKLVITEGKGGKVWDTDGKQYIDCISGFSVANQGHCHPTIVKAMTEQASKLSIISRVLYSDNLGKWEEKICHLAKKDKV 97          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT1_STAAN (Ornithine aminotransferase 1 OS=Staphylococcus aureus (strain N315) GN=rocD1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 40/94 (42.55%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +I L   YS++NY P+ +V S+ KG  +WD +G +Y+D +S +S  NQGHCHP I+KA+ EQA KL++ SR  Y+D    + E++  +   D V
Sbjct:    4 IIELTDYYSSNNYAPLKLVISKGKGVKVWDTDGKQYIDCISGFSVANQGHCHPTIVKAMTEQASKLSIISRVLYSDNLGKWEEKICHLAKKDKV 97          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT1_STAAM (Ornithine aminotransferase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rocD1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 40/94 (42.55%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +I L   YS++NY P+ +V S+ KG  +WD +G +Y+D +S +S  NQGHCHP I+KA+ EQA KL++ SR  Y+D    + E++  +   D V
Sbjct:    4 IIELTDYYSSNNYAPLKLVISKGKGVKVWDTDGKQYIDCISGFSVANQGHCHPTIVKAMTEQASKLSIISRVLYSDNLGKWEEKICHLAKKDKV 97          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: OAT1_STAAC (Ornithine aminotransferase 1 OS=Staphylococcus aureus (strain COL) GN=rocD1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 40/94 (42.55%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +I L   YS++NY P+ +V S+ KG  +WD +G +Y+D +S +S  NQGHCHP I+KA+ EQA KL++ SR  Y+D    + E++  +   D V
Sbjct:    4 IIELTDYYSSNNYAPLKLVISKGKGVKVWDTDGKQYIDCISGFSVANQGHCHPTIVKAMTEQASKLSIISRVLYSDNLGKWEEKICHLAKKDKV 97          
The following BLAST results are available for this feature:
BLAST of FC876375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
OAT_BORPE2.569e-1950.57Ornithine aminotransferase OS=Bordetella pertussis... [more]
OAT_BORPA2.569e-1950.57Ornithine aminotransferase OS=Bordetella parapertu... [more]
OAT_BORBR2.569e-1950.57Ornithine aminotransferase OS=Bordetella bronchise... [more]
OAT1_STAS11.275e-1845.12Ornithine aminotransferase 1 OS=Staphylococcus sap... [more]
OAT1_STAAW2.840e-1842.55Ornithine aminotransferase 1 OS=Staphylococcus aur... [more]
OAT1_STAAS2.840e-1842.55Ornithine aminotransferase 1 OS=Staphylococcus aur... [more]
OAT1_STAAR2.840e-1841.49Ornithine aminotransferase 1 OS=Staphylococcus aur... [more]
OAT1_STAAN2.840e-1842.55Ornithine aminotransferase 1 OS=Staphylococcus aur... [more]
OAT1_STAAM2.840e-1842.55Ornithine aminotransferase 1 OS=Staphylococcus aur... [more]
OAT1_STAAC2.840e-1842.55Ornithine aminotransferase 1 OS=Staphylococcus aur... [more]

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Properties
Property NameValue
Genbank descriptionC32004A08EF DevOvary1 Citrus clementina cDNA clone C32004A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876375 ID=FC876375; Name=FC876375; organism=Citrus clementina; type=EST; length=655bp
GGCATTGGGGATTGGTTCACTGAGTTGAATGAATGGGAATGGATTTTTGC
TTTGGGACGTGTACCTTTACGGCAACCATGACGTAAAAGTCGTAAGCTAA
ACGGAACATAACAAAAACAAATATGGAAATTTGACGTCCTGCTTTCGTTC
TTATCTATCATTAGCACACTTCAACGTTGGGTTATCCTAGGATCCAACTG
AACGTAATTAGATTGGATTATCAAAAATTACAGTGATATTATTGTTATTA
TGAATTCAATGGGTGCAACAAGAAGAAATTTGCATTGCTTATTGAGCAGA
GTATGCAGGAAGAGAAGTTATGGTGCTCAACCTCAAGGAGGCACTTCTCC
TTCTTCTTCTTCTTCTCAACAACTCATCAATTTGGAGTATGAATACAGTG
CCCACAATTACCACCCAGTTCCGATTGTATTCTCTCAAGCAAAAGGGTCA
TCCATATGGGATCCAGAGGGCAATAAATATCTGGATTTTCTCTCAGCTTA
CTCTGCAGTTAATCAGGGACATTGTCATCCAAAAATCATGAAAGCATTAC
AAGAGCAGGCAGAAAAGCTTACTCTCAGCTCTAGAGCCTTCTATAATGAT
AAATTTCCAGTATTTGCAGAGCGTCTTACAAGCATGTTTGGGTATGATAT
GGTAC
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