FC876375

Overview
NameFC876375
Unique NameFC876375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876375_ssr350 microsatellite FC876375_ssr350:350..364. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: ARGD_METJA (Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii GN=argD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.107e-13
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 1
Query:  376 INLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD 648
            I+LE +Y    Y  +P+V  + KG  ++D +G KYLDFL+     N GHCHPK+++A+++QAE L  +S  +Y       A++L  + G D
Sbjct:    7 IDLEKKYHLQIYGRLPVVLVEGKGMEVYDIDGKKYLDFLAGIGVNNVGHCHPKVVEAIKKQAETLIHTSNIYYTIPQIKLAKKLVELSGLD 97          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: ARGD_THETN (Acetylornithine aminotransferase OS=Thermoanaerobacter tengcongensis GN=argD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 29/77 (37.66%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDK 603
            +I  E +Y    Y+  PI+  + +G+ +WD EGN YLDF++  +  + GHCHP +++A+++QAE L   S  ++N+K
Sbjct:    1 MITYEKKYLMDTYNRYPIMLVKGEGTRVWDSEGNAYLDFVAGIAVNSLGHCHPALVEAIKKQAETLIHCSNLYWNEK 77          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: ARGD_METMA (Acetylornithine aminotransferase OS=Methanosarcina mazei GN=argD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 35/94 (37.23%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +I+ + +Y    Y   P+V S+ KG+ + D  G +Y+D ++  +  N GHCHP ++KA+Q QAEKL   S  +Y +    FAE L S+ G + V
Sbjct:   18 VIDKDSKYVMQTYGRQPLVLSKGKGAVVQDIYGKEYIDCVAGIAVNNVGHCHPTVVKAIQAQAEKLIHVSNLYYTEIQAEFAETLASITGMECV 111          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: ARGD_METTH (Acetylornithine aminotransferase OS=Methanobacterium thermoautotrophicum GN=argD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.156e-11
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +I LE ++    Y   PIV S  KG+++WD EGN Y+D  +  +  + GH HPK+  A+  QA++L  SS  +Y  +    A+ LT++  +D V
Sbjct:    6 IIELERKFIMQTYTRQPIVLSHGKGATVWDIEGNSYIDCFAGVAVNSIGHAHPKVALAICHQAQRLIHSSNIYYTREQVELAKLLTAISPHDRV 99          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: ARGD_METAC (Acetylornithine aminotransferase OS=Methanosarcina acetivorans GN=argD PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.575e-11
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  373 LINLEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMV 654
            +I  + +Y    Y   P+V S+ KG+ + D  G +Y+D ++  +  N GHCHP ++KA+Q QAE L   S  +Y +    FAE L S+ G + V
Sbjct:   18 VIEKDSKYVMQTYGRQPLVLSKGKGAVVQDIYGKEYIDCVAGIAVNNVGHCHPTVVKAIQAQAENLIHVSNLYYTEIQAEFAETLASITGMERV 111          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: ARGD_WOLSU (Acetylornithine aminotransferase OS=Wolinella succinogenes GN=argD PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.392e-11
Identity = 32/90 (35.56%), Postives = 53/90 (58.89%), Query Frame = 1
Query:  382 LEYEYSAHNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDM 651
            L+ EY  H+Y    + F+Q K +++WD EG  Y+DF S  +  + GH + ++  A+ +QA+KL  +S  +Y +     AE+L  + GYDM
Sbjct:    5 LDKEYVLHSYGRNYVQFTQGKNATLWDSEGKDYIDFASGIAVCSVGHGNERLAGAICDQAKKLIHTSNLYYIEPQARLAEKLVKLSGYDM 94          
BLAST of FC876375 vs. ExPASy Swiss-Prot
Match: ARGD_NITEU (Acetylornithine aminotransferase OS=Nitrosomonas europaea GN=argD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 31/82 (37.80%), Postives = 48/82 (58.54%), Query Frame = 1
Query:  403 HNYHPVPIVFSQAKGSSIWDPEGNKYLDFLSAYSAVNQGHCHPKIMKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD 648
            + Y  +P+ F + +G  +WD +GN+YLD LS  +    GHCHP ++KAL EQ   L  +S  ++       A+RLTS+ G +
Sbjct:    6 NTYARLPVTFVKGEGVWLWDDQGNRYLDALSGIAVCGVGHCHPVLVKALCEQVSTLIHTSNVYHIQHQERLADRLTSLSGLE 87          
The following BLAST results are available for this feature:
BLAST of FC876375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ARGD_METJA2.107e-1338.46Acetylornithine aminotransferase OS=Methanocaldoco... [more]
ARGD_THETN5.189e-1237.66Acetylornithine aminotransferase OS=Thermoanaeroba... [more]
ARGD_METMA5.189e-1237.23Acetylornithine aminotransferase OS=Methanosarcina... [more]
ARGD_METTH1.156e-1136.17Acetylornithine aminotransferase OS=Methanobacteri... [more]
ARGD_METAC2.575e-1136.17Acetylornithine aminotransferase OS=Methanosarcina... [more]
ARGD_WOLSU4.392e-1135.56Acetylornithine aminotransferase OS=Wolinella succ... [more]
ARGD_NITEU5.737e-1137.80Acetylornithine aminotransferase OS=Nitrosomonas e... [more]

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Properties
Property NameValue
Genbank descriptionC32004A08EF DevOvary1 Citrus clementina cDNA clone C32004A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876375 ID=FC876375; Name=FC876375; organism=Citrus clementina; type=EST; length=655bp
GGCATTGGGGATTGGTTCACTGAGTTGAATGAATGGGAATGGATTTTTGC
TTTGGGACGTGTACCTTTACGGCAACCATGACGTAAAAGTCGTAAGCTAA
ACGGAACATAACAAAAACAAATATGGAAATTTGACGTCCTGCTTTCGTTC
TTATCTATCATTAGCACACTTCAACGTTGGGTTATCCTAGGATCCAACTG
AACGTAATTAGATTGGATTATCAAAAATTACAGTGATATTATTGTTATTA
TGAATTCAATGGGTGCAACAAGAAGAAATTTGCATTGCTTATTGAGCAGA
GTATGCAGGAAGAGAAGTTATGGTGCTCAACCTCAAGGAGGCACTTCTCC
TTCTTCTTCTTCTTCTCAACAACTCATCAATTTGGAGTATGAATACAGTG
CCCACAATTACCACCCAGTTCCGATTGTATTCTCTCAAGCAAAAGGGTCA
TCCATATGGGATCCAGAGGGCAATAAATATCTGGATTTTCTCTCAGCTTA
CTCTGCAGTTAATCAGGGACATTGTCATCCAAAAATCATGAAAGCATTAC
AAGAGCAGGCAGAAAAGCTTACTCTCAGCTCTAGAGCCTTCTATAATGAT
AAATTTCCAGTATTTGCAGAGCGTCTTACAAGCATGTTTGGGTATGATAT
GGTAC
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