FC876376

Overview
NameFC876376
Unique NameFC876376
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:13..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876376 vs. ExPASy Swiss-Prot
Match: AQPZ1_RHIME (Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  350 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL--VKAFQKSYYTRYGGGANELAD----GYSTGVGLAAEIIGT 655
            G+G+LG+++AFG  +  + Y   GISGGH NPAV+ GL +A ++     V Y++AQ  GAI+   +  V A  K+ +   G  AN   +    GYS    L  E++ T
Sbjct:   33 GIGLLGVSFAFGLTVLTMAYAVGGISGGHFNPAVSVGLAVAGRMPPASLVGYILAQVTGAIAAAAVLYVIASGKADFQLGGFAANGYGEHSPGGYSLTAALVTEVVMT 140          
BLAST of FC876376 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 52/149 (34.90%), Postives = 71/149 (47.65%), Query Frame = 2
Query:  236 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVK--AFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTLCVVYTV 676
            +A +AEFIA            I Y   T    N       G++ IA A    +FV V   A ISGGH+NPAVTFGL +   ++++  + Y +AQ LGA     L+K     K+  T    G +EL        G+  EI+ T  +VYTV
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYGQLT----NGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHGVAGISELE-------GVVMEIVITFALVYTV 156          
BLAST of FC876376 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUSU (Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 45/108 (41.67%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  350 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL--VKAFQKSYYTRYG---GGANELA-DGYSTGVGLAAEIIGT 655
            G+G LG+A AFG  +  + Y   GISGGH NPAV+  L +A ++     + Y VAQ LGAI+   +  V A  K  ++  G    G  EL+  GYS   GL  EII T
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLSLTVAGRLPAKDLIPYWVAQVLGAIATAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILT 140          
BLAST of FC876376 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 48/155 (30.97%), Postives = 74/155 (47.74%), Query Frame = 2
Query:  212 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGT----LCV 664
            E+   +F++A+ AEF+A            + + S               IL I+ AFG  I  L      +SGGHINPA+T  L +  ++SL+RAV Y+ AQ +GAI+G G++  +      R     N L +  + G  +  E+I T    LC+
Sbjct:    4 EVCSLAFFKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGIL-YWLAPLNARGNLAVNALNNNTTPGKAMVVELILTFQLALCI 146          
BLAST of FC876376 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 50/155 (32.26%), Postives = 70/155 (45.16%), Query Frame = 2
Query:  212 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTLCVVYTV 676
            E   +SF+RA+ AEF              +  K    PA          +L IA AFG ++  +V     +SG HINPAVTF   +  ++SL RA+ Y+ AQ LGA++G  ++     +   R     N L  G S G     EI  TL  V  +
Sbjct:    3 EFRSFSFWRAVFAEFFGTMFYVFFGLGASL--KWAAGPAN---------VLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPA-AIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCI 145          
BLAST of FC876376 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 47/155 (30.32%), Postives = 74/155 (47.74%), Query Frame = 2
Query:  212 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGT----LCV 664
            E+   +F++A+ AEF+A            + + S               IL I+ AFG  I  L      +SGGHINPA+T  L +  ++SL+RA+ Y+ AQ +GAI+G G++         R     N L++  + G  +  E+I T    LC+
Sbjct:    4 EVCSVAFFKAVFAEFLATLIFVFFGLGSALKWPSALPT-----------ILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGILYWLAPG-NARGNLAVNALSNNTTPGKAVVVELILTFQLALCI 146          
BLAST of FC876376 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 49/149 (32.89%), Postives = 67/149 (44.97%), Query Frame = 2
Query:  236 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGAN----ELADGYSTGVGLAAEIIGTLCVVY 670
            RA I+EFIA            +           +    G+  + +A A G  + V V     +SGGH+NPAVTFG  +  +VSLVRAV+Y  AQ LGA++   L++           GGA      LA G   G  +  E + T   VY
Sbjct:   28 RAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALG--LAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLAT--------GGARPPGFALASGVGDGHAVLLEAVMTFGFVY 166          
BLAST of FC876376 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 50/147 (34.01%), Postives = 66/147 (44.90%), Query Frame = 2
Query:  236 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTLCVVYTV 676
            +A +AEFIA            I Y   T    N       G++ IA A    +FV V   A ISGGH+NPAVTFGL +   ++++  V Y VAQ LGA      V      + T           G S   G+  E++ T  +VYTV
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYGQLT----NGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGVFYWVAQLLGA-----TVACLLLGFVTHGKAIPTHAVAGISELEGVVFEVVITFALVYTV 156          
BLAST of FC876376 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 51/155 (32.90%), Postives = 71/155 (45.81%), Query Frame = 2
Query:  212 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTLCVVYTV 676
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  Y+ AQ LGA++G  ++ +       R     N L  G S G     EI  TL  V  +
Sbjct:    1 ELRSASFWRAIFAEFFATLFYVFFG----LGSSLRWAPGP-------LHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCI 143          
BLAST of FC876376 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 51/155 (32.90%), Postives = 71/155 (45.81%), Query Frame = 2
Query:  212 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTLCVVYTV 676
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  Y+ AQ LGA++G  ++ +       R     N L  G S G     EI  TL  V  +
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCI 145          
The following BLAST results are available for this feature:
BLAST of FC876376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
AQPZ1_RHIME2.830e-1137.04Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 ... [more]
TIP21_ORYSJ3.697e-1134.90Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
AQPZ_BRUSU3.697e-1141.67Aquaporin Z OS=Brucella suis GN=aqpZ PE=3 SV=1[more]
AQP5_RAT3.697e-1130.97Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
MIP_RANPI4.828e-1132.26Lens fiber major intrinsic protein OS=Rana pipiens... [more]
AQP5_MOUSE4.828e-1130.32Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
TIP32_MAIZE6.305e-1132.89Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP21_MAIZE6.305e-1134.01Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
MIP_RAT6.305e-1132.90Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE6.305e-1132.90Lens fiber major intrinsic protein OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC32004A09EF DevOvary1 Citrus clementina cDNA clone C32004A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876376 ID=FC876376; Name=FC876376; organism=Citrus clementina; type=EST; length=692bp
GATCCAAAACAACCAAAAAAAAAAAAGAAAAAGAAAAAGGCTTCTCTCTC
GTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCTGTTTCTCTCCAA
ATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGTGGCAGAGCA
CGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGGAGCCGCTAT
TCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAGCCTTGATAGCT
GAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCTTGACTGTCAT
TGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCTGTGCCG
GCGTCGGCATCCTCGGTATCGCCTGGGCCTTCGGTGGCATGATCTTTGTC
CTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAACCCGGCAGT
GACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCCGTGCTGTGA
TGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGTGTTGGGTTGGTC
AAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGGGGCCAACGA
GCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGCCGCCGAGATCATCG
GCACCCTTTGTGTGGTTTACACTGTCTCTCGGCACTGATCCC
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