FC876376

Overview
NameFC876376
Unique NameFC876376
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:13..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876376 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 51/155 (32.90%), Postives = 70/155 (45.16%), Query Frame = 2
Query:  212 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTLCVVYTV 676
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA++G  ++ +       R     N L    S G     EI  TL  V  +
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGSSLRWAPGP-------LHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCI 145          
BLAST of FC876376 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 51/155 (32.90%), Postives = 72/155 (46.45%), Query Frame = 2
Query:  227 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAG-VGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGV----GLAAEIIGTLCVVYTV 676
            S  +A ++EFIA            + +   T      DG     G++ IA A    +FV V   A ISGGH+NPAVT GL +   ++L+    Y +AQCLG+I     V      + T    G +    G S G+    G+  EI+ T  +VYTV
Sbjct:   16 SSLKAYLSEFIATLLFVFAGVGSAVAFAKLTS-----DGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSI-----VACLLLVFVT---NGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTV 157          
BLAST of FC876376 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 2
Query:  344 CAGVGI------LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTLCVVYTV 676
            C GV I      + IA  FG +I  +V C   +SG HINPAVT GL +   +S+++A+ Y++ QC+GAI+G  ++K    + + R       LA G +  +G   E   T  ++  V
Sbjct:   47 CTGVQISEGDVVVRIALTFGFIIATMVQCIGHVSGCHINPAVTCGLLVTGHISILKAIFYIIVQCVGAIAGSAILKVITPAEF-RGTLCMTSLAPGVTPPMGFLVEACITFVLILLV 162          
The following BLAST results are available for this feature:
BLAST of FC876376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
MIP_HUMAN6.305e-1132.90Lens fiber major intrinsic protein OS=Homo sapiens... [more]
TIP23_ARATH8.235e-1132.90Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
AQP_CICVR8.235e-1134.19Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32004A09EF DevOvary1 Citrus clementina cDNA clone C32004A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876376 ID=FC876376; Name=FC876376; organism=Citrus clementina; type=EST; length=692bp
GATCCAAAACAACCAAAAAAAAAAAAGAAAAAGAAAAAGGCTTCTCTCTC
GTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCTCTGTTTCTCTCCAA
ATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGTGGCAGAGCA
CGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGGAGCCGCTAT
TCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAGCCTTGATAGCT
GAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCTTGACTGTCAT
TGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCTGTGCCG
GCGTCGGCATCCTCGGTATCGCCTGGGCCTTCGGTGGCATGATCTTTGTC
CTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATTAACCCGGCAGT
GACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGTCCGTGCTGTGA
TGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCGGTGTTGGGTTGGTC
AAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGTGGGGCCAACGA
GCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGCCGCCGAGATCATCG
GCACCCTTTGTGTGGTTTACACTGTCTCTCGGCACTGATCCC
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