FC876377

Overview
NameFC876377
Unique NameFC876377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10441 contig Ccv1_Contig10441:221..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PAL1_RUBID (Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=PAL1 PE=2 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.179e-103
Identity = 192/246 (78.05%), Postives = 211/246 (85.77%), Query Frame = 3
Query:    3 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALCHGTAVGSGLAS 728
            D LNW + AE+LKGSH++E+KRMV++YRKPVV LGGETLT+ QVAAIA+      VELSE  R GVKASSDWVM+SM KGTDSYGVTTGFGATSHRRTKNGGALQ+ELIRFLNAGIFG+  +S+H LPH+ATRAAMLVR NTLLQGYSGIRFEILEAITK LN NITPCLPLRGTITASGDLVPLSYIAGLL GRPNSK+ GP GE +   E  K AG   GFFELQPKEGLAL +GTAVGSG+AS
Sbjct:   19 DPLNWNMAAESLKGSHVDELKRMVSDYRKPVVKLGGETLTIGQVAAIASHDGGVRVELSEEKRAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQRELIRFLNAGIFGSSLDSTHKLPHTATRAAMLVRFNTLLQGYSGIRFEILEAITKFLNGNITPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKSVGPKGETLSPAEGFKLAGIDGGFFELQPKEGLALVNGTAVGSGMAS 264          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PAL4_ARATH (Phenylalanine ammonia-lyase 4 OS=Arabidopsis thaliana GN=PAL4 PE=1 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 7.644e-103
Identity = 196/246 (79.67%), Postives = 208/246 (84.55%), Query Frame = 3
Query:    3 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS--TNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGT-ESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGF-GFFELQPKEGLALCHGTAVGSGLAS 728
            D LNW   AE LKGSHL+EVKRMV EYRK  V LGGETLT+ QVAA+A     + VEL+E AR GVKASS+WVMESMN+GTDSYGVTTGFGATSHRRTK GGALQ ELIRFLNAGIFG G  ++SHTLP   TRAAMLVRVNTLLQGYSGIRFEILEAITKLLNH ITPCLPLRGTITASGDLVPLSYIAGLL GRPNSKA GP+GE + A EA K AG   FFELQPKEGLAL +GTAVGSGLAS
Sbjct:   16 DPLNWNATAEALKGSHLDEVKRMVKEYRKEAVKLGGETLTIGQVAAVARGGGGSTVELAEEARAGVKASSEWVMESMNRGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGPGAGDTSHTLPKPTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHEITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGETLTASEAFKLAGVSSFFELQPKEGLALVNGTAVGSGLAS 261          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PAL1_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=PAL PE=2 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 6.057e-100
Identity = 189/247 (76.52%), Postives = 209/247 (84.62%), Query Frame = 3
Query:    3 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFG---FFELQPKEGLALCHGTAVGSGLAS 728
            D LNW + AE+L+GSHL+EVKRMVAE+RKP V LGGETLTVAQVA IA+  ++  VELSE AR GVKASSDWVM+SMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGN TES HTLPHSATRAAMLVR+NTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGL+ GRPNSKA GPNGE ++A+EA + +  G   F    P++GL       +  G+AS
Sbjct:   15 DPLNWEMAAESLRGSHLDEVKRMVAEFRKPAVKLGGETLTVAQVARIASRDNAVAVELSEEARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNATESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLITGRPNSKAVGPNGETLNAEEALRLSRSGRRIFRVASPRKGLPSLMAPPLVLGMAS 261          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PAL2_IPOBA (Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.492e-98
Identity = 186/245 (75.92%), Postives = 204/245 (83.27%), Query Frame = 3
Query:    3 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVK-ASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALCHGTAVGSGLAS 728
            D LNW + A++LKGSHL+EVKRMVAE+R P V +GG+TLT  +   IA      + S       + +SSDWVM SMN GTDSYGVTTGFGATSHRRTKNG ALQ+ELIRFLNAGIFG GT +SHTLPHSATRAAMLVR+NTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLL GRPNSKA GPNGE + A+EA K AG   GFFELQPKEGLAL +GTAVGSG+AS
Sbjct:   18 DPLNWEMAADSLKGSHLDEVKRMVAEFRNPAVKIGGQTLTSLRSPPIAARDNASKWSSPRLPARRESSSDWVMNSMNNGTDSYGVTTGFGATSHRRTKNGHALQQELIRFLNAGIFGTGTGASHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEALTAEEAFKLAGVQGGFFELQPKEGLALVNGTAVGSGMAS 262          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PAL1_POPKI (Phenylalanine ammonia-lyase G1 OS=Populus kitakamiensis GN=PALG1 PE=3 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 9.050e-96
Identity = 184/238 (77.31%), Postives = 200/238 (84.03%), Query Frame = 3
Query:   27 AETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNV--ELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALCHGTAVGSGLAS 728
            A++LKGSHL+EVKRM+ EYR PVV LGGETLT+ QV AIA+    V  ELSE AR GVKAS+DWVM+S N    S+ VT GFGATSHR+TK GG LQKELIRFLN GIFGNGTES+H LP SATRAAMLVR NTLLQGYSGIRFE+LEAITKLLNHNITPCLPLRGTITASGDLVPL+YIAGLL GR NSKA GPNGE + + EA  QAG   GFFELQPKEGLAL +GTAVGSGLAS
Sbjct:    3 ADSLKGSHLDEVKRMIEEYRNPVVKLGGETLTIGQVTAIASGHVGVMVELSEEARAGVKASNDWVMDSKN----SHAVTAGFGATSHRKTKQGGELQKELIRFLNVGIFGNGTESNHILPRSATRAAMLVRTNTLLQGYSGIRFEMLEAITKLLNHNITPCLPLRGTITASGDLVPLAYIAGLLTGRHNSKAVGPNGEPLTSTEAFTQAGINGGFFELQPKEGLALVNGTAVGSGLAS 236          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PALY_BROFI (Phenylalanine ammonia-lyase OS=Bromheadia finlaysoniana GN=PAL PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.633e-95
Identity = 181/246 (73.58%), Postives = 209/246 (84.96%), Query Frame = 3
Query:    3 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATS--STNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALCHGTAVGSGLAS 728
            D LNWG  A  L+GSHL+EVK+MV E+R+PVV L G  L ++QVAA+A    ++ VEL+ESAR GVKASSDWV+ES++KGTDSYGVTTGFGATSHRRTK GGALQKELI+FLNAGIFG+G  +S+TLP +ATRAAMLVR+NTLLQGYSGIRFEIL+AI  LLN NITPCLPLRGTITASGDLVPLSY+AG+L GRPNSKA  PNG  +DA  A + AG   GFF+LQPKEGLAL +GTAVGSG+AS
Sbjct:   15 DPLNWGAAAAELQGSHLDEVKKMVEEFRRPVVKLEGVKLKISQVAAVAFGGGASAVELAESARAGVKASSDWVLESVDKGTDSYGVTTGFGATSHRRTKQGGALQKELIKFLNAGIFGSG--NSNTLPSAATRAAMLVRINTLLQGYSGIRFEILKAIATLLNKNITPCLPLRGTITASGDLVPLSYLAGILTGRPNSKARTPNGSTVDATTAFRLAGISSGFFDLQPKEGLALVNGTAVGSGVAS 258          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 346.665 bits (888), Expect = 7.662e-95
Identity = 182/246 (73.98%), Postives = 201/246 (81.71%), Query Frame = 3
Query:    3 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTES---SHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGF-GFFELQPKEGLALCHGTAVGSGLAS 728
            D LNW V AE LKGSHLEEVK+MV +YRK  V LGGETLT+ QVAA+A+    VELSE AR GVKASSDWVMESMN+ TD+YG+TTGFG++S RRT  G ALQKELIR+LNAGIF  G E    S+TLP  ATRAAML+RVNTLLQGYSGIRFEILEAIT LLN  ITP LPLRGTITASGDLVPLSYIAG L GRPNS++ GP+GEI+ A EA K AG   FFEL+PKEGLAL +GTAVGS LAS
Sbjct:   13 DPLNWNVAAEALKGSHLEEVKKMVKDYRKGTVQLGGETLTIGQVAAVASGGPTVELSEEARGGVKASSDWVMESMNRDTDTYGITTGFGSSSRRRTDQGAALQKELIRYLNAGIFATGNEDDDRSNTLPRPATRAAMLIRVNTLLQGYSGIRFEILEAITTLLNCKITPLLPLRGTITASGDLVPLSYIAGFLIGRPNSRSVGPSGEILTALEAFKLAGVSSFFELRPKEGLALVNGTAVGSALAS 258          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PALY_WHEAT (Phenylalanine ammonia-lyase OS=Triticum aestivum GN=PAL PE=3 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.307e-94
Identity = 186/245 (75.92%), Postives = 199/245 (81.22%), Query Frame = 3
Query:    3 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS-TNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALCHGTAVGSGLAS 728
            D LNWG  AE L GSHLE VKRMV EYRKPVV + G T T+A VAA+A  S T VEL ESAR  VK SSDWVM SM  GTDSYGVTTGFGATSHRRTK GGALQ+ELIRFLNAG FG GT+  H LP +ATRAAMLVRVNTLLQGYSGIRFEILE I  LLN N+TPCLPLRGTITASGDLVPLSYIAGL+ GRPNS AT P+G  ++A EA K AG   GFFELQPKEGLA+ +GTAVGSGLAS
Sbjct:   12 DPLNWGKAAEELSGSHLEAVKRMVEEYRKPVVTMEGAT-TIAMVAAVAAGSDTRVELDESARGRVKESSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGTGTD-GHVLPAAATRAAMLVRVNTLLQGYSGIRFEILETIATLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRPNSMATAPDGSKVNAAEAFKIAGIQHGFFELQPKEGLAMVNGTAVGSGLAS 254          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=ZB8 PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.307e-94
Identity = 181/245 (73.88%), Postives = 201/245 (82.04%), Query Frame = 3
Query:    3 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS-TNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALCHGTAVGSGLAS 728
            D LNWG   E + GSHL+EVKRMVAEYR+P+V + G +L +AQVAA+A +    VEL ESARE VKASSDWVM SM  GTDSYGVTTGFGATSHRRTK GGALQ+ELIRFLNAG FG GT+  H LP  ATRAAMLVR+NTLLQGYSGIRFEILEAI KLLN N+TPCLPLRGTITASGDLVPLSYIAGL+ GR N+ A  P+G  ++A EA K AG   GFFELQPKEGLA+ +GTAVGSGLAS
Sbjct:   24 DPLNWGKATEEMTGSHLDEVKRMVAEYRQPLVKIEGASLRIAQVAAVAAAGEARVELDESARERVKASSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGTGTDG-HVLPAEATRAAMLVRINTLLQGYSGIRFEILEAIAKLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRENAVAVAPDGSKVNAAEAFKIAGIQGGFFELQPKEGLAMVNGTAVGSGLAS 267          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSI (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica GN=ZB8 PE=3 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.307e-94
Identity = 181/245 (73.88%), Postives = 201/245 (82.04%), Query Frame = 3
Query:    3 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS-TNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALCHGTAVGSGLAS 728
            D LNWG   E + GSHL+EVKRMVAEYR+P+V + G +L +AQVAA+A +    VEL ESARE VKASSDWVM SM  GTDSYGVTTGFGATSHRRTK GGALQ+ELIRFLNAG FG GT+  H LP  ATRAAMLVR+NTLLQGYSGIRFEILEAI KLLN N+TPCLPLRGTITASGDLVPLSYIAGL+ GR N+ A  P+G  ++A EA K AG   GFFELQPKEGLA+ +GTAVGSGLAS
Sbjct:   24 DPLNWGKATEEMTGSHLDEVKRMVAEYRQPLVKIEGASLRIAQVAAVAAAGEARVELDESARERVKASSDWVMNSMMNGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGAFGTGTDG-HVLPAEATRAAMLVRINTLLQGYSGIRFEILEAIAKLLNANVTPCLPLRGTITASGDLVPLSYIAGLVTGRENAVAVAPDGSKVNAAEAFKIAGIQGGFFELQPKEGLAMVNGTAVGSGLAS 267          
The following BLAST results are available for this feature:
BLAST of FC876377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
PAL1_RUBID1.179e-10378.05Phenylalanine ammonia-lyase 1 OS=Rubus idaeus GN=P... [more]
PAL4_ARATH7.644e-10379.67Phenylalanine ammonia-lyase 4 OS=Arabidopsis thali... [more]
PAL1_IPOBA6.057e-10076.52Phenylalanine ammonia-lyase OS=Ipomoea batatas GN=... [more]
PAL2_IPOBA1.492e-9875.92Phenylalanine ammonia-lyase OS=Ipomoea batatas PE=... [more]
PAL1_POPKI9.050e-9677.31Phenylalanine ammonia-lyase G1 OS=Populus kitakami... [more]
PALY_BROFI2.633e-9573.58Phenylalanine ammonia-lyase OS=Bromheadia finlayso... [more]
PAL3_ARATH7.662e-9573.98Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]
PALY_WHEAT1.307e-9475.92Phenylalanine ammonia-lyase OS=Triticum aestivum G... [more]
PAL2_ORYSJ1.307e-9473.88Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL2_ORYSI1.307e-9473.88Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC32004A10EF DevOvary1 Citrus clementina cDNA clone C32004A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876377 ID=FC876377; Name=FC876377; organism=Citrus clementina; type=EST; length=728bp
GGGATGCGTTGAACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCAT
TTGGAGGAAGTGAAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAA
CCTCGGTGGTGAGACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGT
CCTCTACGAATGTGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCAAGGCC
AGCAGTGATTGGGTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGG
CGTTACCACTGGCTTTGGTGCCACTTCTCATCGGAGAACCAAGAACGGCG
GTGCTCTTCAGAAGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGA
AACGGAACAGAGTCATCTCACACGCTACCTCACTCAGCAACAAGGGCAGC
CATGCTTGTGAGGGTTAACACTCTTCTCCAGGGCTACTCCGGCATCCGAT
TTGAAATCCTGGAAGCGATCACAAAGCTGCTCAATCACAACATCACTCCA
TGCCTCCCTCTTCGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCT
TTCCTACATTGCCGGACTGCTCGCCGGCCGGCCCAATTCTAAGGCCACCG
GGCCTAATGGAGAGATCATTGATGCCCAGGAAGCCTCTAAACAAGCGGGT
TTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTTTGTCATGG
CACTGCTGTTGGTTCTGGCCTGGCTTCT
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