FC876377

Overview
NameFC876377
Unique NameFC876377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10441 contig Ccv1_Contig10441:221..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPA (Histidine ammonia-lyase OS=Legionella pneumophila (strain Paris) GN=hutH PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.989e-26
Identity = 69/203 (33.99%), Postives = 114/203 (56.16%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            L++  +  I     +  L+E A E ++AS   V + +++    YG+ TGFG+ +++   +     KEL R +   +  +   +   LP S     +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G    +     G++I A+E  K AG    EL+ KEGLAL +G  V + LA
Sbjct:   12 LSLVSIKQILDEELSCVLAEHAFELIRASHQTVKKVIDEKKTVYGINTGFGSLANQTISSD--CLKELQRNI---VLSHACGTGKLLPDSVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLGEGEVR---HQGQVISAEEGLKLAGLKPLELEAKEGLALLNGLQVSTALA 206          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_ANADE (Histidine ammonia-lyase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=hutH PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.989e-26
Identity = 78/207 (37.68%), Postives = 109/207 (52.66%), Query Frame = 3
Query:  102 LGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNG----EIIDAQEASKQAGFGFFELQPKEGLALCHGT 704
            L GETLT+ QV A+AT +    L+ +ARE V+ S   V   +  G   YG+ TGFG  +  R        LQ+ L+    AG+          LP +  RA +L+R N L +G SGIR   LE +  +L   + P +P RG++ ASGDL PL+++A +L G   +    P      E +   EA ++AG     LQPKEGLAL +GT
Sbjct:    6 LDGETLTLEQVRAVATGAARAALAPAARERVRRSRALVDARLEDGEAHYGINTGFGTLAEVRIPRADLERLQRNLVLSHAAGV-------GAPLPLAEARALVLLRANVLAKGVSGIRERTLELLLAMLERGVVPVVPERGSVGASGDLAPLAHLALVLIGDGEAFLAPPGAAAPPERLPGGEALRRAGLEPVVLQPKEGLALVNGT 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_VIBCH (Histidine ammonia-lyase OS=Vibrio cholerae GN=hutH PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.394e-26
Identity = 69/205 (33.66%), Postives = 116/205 (56.59%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            L++ Q+  ++ S   + L   A   +  S+  V + +++G   YG+ TGFG  ++ +   ++   LQK ++    AGI          +     R  ML+++N+L +GYSGIR E+++A+ +L+N+ I PC+P +G++ ASGDL PL++++ +L G   ++    NG+II   EA K AG     L PKEGLAL +GT   +  A
Sbjct:   11 LSLKQLRQVSRSPVVLSLDPEAIPAIAESAQVVEQVISEGRTVYGINTGFGLLANTKIAPQDLETLQKSIVLSHAAGI-------GELMSDETVRLMMLLKINSLARGYSGIRLEVIQALIELVNNQIYPCVPKKGSVGASGDLAPLAHMSTVLLGEGQARY---NGKIISGLEAMKIAGLEPITLAPKEGLALLNGTQASTAFA 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPL (Histidine ammonia-lyase OS=Legionella pneumophila (strain Lens) GN=hutH PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 71/203 (34.98%), Postives = 115/203 (56.65%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            L++  +  I     +  L+ESA E + AS   V + +++    YG+ TGFG+ +++ T +   L KEL R +   +  +   +   LP       +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G    +     G++I A+E  K AG    EL+ KEGLAL +G  V + LA
Sbjct:   12 LSLLSIKQILDEGQSCVLAESAFELINASHQTVRKVIDEKKTVYGINTGFGSLANQ-TISADCL-KELQRNI---VLSHACGTGKLLPDDVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLGEGEVR---HQGQLISAEEGLKLAGLKPLELEAKEGLALLNGLQVSTALA 206          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPC (Histidine ammonia-lyase OS=Legionella pneumophila (strain Corby) GN=hutH PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 68/203 (33.50%), Postives = 114/203 (56.16%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            L++  +  I     +  L+E+A E ++AS   V + +++    YG+ TGFG+ +++   +     KEL R +   +  +   +   LP       +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G    +     G++I A+E  K AG    EL+ KEGLAL +G  V + LA
Sbjct:   12 LSLLSIKQILDEELSCVLAENAFELIRASHQTVKKVIDEKKTVYGINTGFGSLANQTISSD--CLKELQRNI---VLSHACGTGKLLPDDVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLGEGEVR---HQGQVISAEEGLKLAGLKPLELEAKEGLALLNGLQVSTALA 206          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_STIAU (Histidine ammonia-lyase OS=Stigmatella aurantiaca GN=hutH PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.560e-26
Identity = 76/208 (36.54%), Postives = 114/208 (54.81%), Query Frame = 3
Query:   87 KPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGT 704
            +P +N+ G+TL + ++  +A  +  VEL+ +A   VKA+ D V       T SYG+ TGFG  +  R   K+   LQ+ LI    AG+          LP    R  +L+R N L +GYSGIR E L    ++LN ++ P +P RG++ ASGDL PL+++A +  G   +      GE + A +A ++AG     L+ KEGLAL +GT
Sbjct:    3 RPRLNIDGDTLKLEEILQVARHTVTVELAPAAAARVKAARDLVDRVAAGDTPSYGINTGFGTLAEVRIDKKDLRELQRNLILSHAAGV-------GSPLPLPEARVLLLLRCNVLAKGYSGIRPETLALALEMLNRDVVPVVPERGSVGASGDLAPLAHLALVFIGEGEAFY---KGERLPAAQALERAGLKPVVLEAKEGLALVNGT 200          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_ANASK (Histidine ammonia-lyase OS=Anaeromyxobacter sp. (strain K) GN=hutH PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.560e-26
Identity = 77/207 (37.20%), Postives = 108/207 (52.17%), Query Frame = 3
Query:  102 LGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNG----EIIDAQEASKQAGFGFFELQPKEGLALCHGT 704
            L GETLT+ QV A+AT +    L+ +ARE V+ S   V   +  G   YG+ TGFG  +  R        LQ+ L+    AG+          LP    RA +L+R N L +G SGIR   L+ +  +L   + P +P RG++ ASGDL PL+++A +L G   +    P      E +   EA ++AG     LQPKEGLAL +GT
Sbjct:    6 LDGETLTLEQVRAVATGAARAALAPAARERVRRSRALVDARLEDGEAHYGINTGFGTLAEVRIPRADLERLQRNLVLSHAAGV-------GAPLPLPEARALVLLRANVLAKGVSGIRERTLDLLLAMLERGVVPVVPERGSVGASGDLAPLAHLALVLIGDGEAFLAPPGAAGRPERLPGGEALRRAGLEPVVLQPKEGLALVNGT 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_ANAD2 (Histidine ammonia-lyase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=hutH PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.560e-26
Identity = 77/207 (37.20%), Postives = 108/207 (52.17%), Query Frame = 3
Query:  102 LGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNG----EIIDAQEASKQAGFGFFELQPKEGLALCHGT 704
            L GETLT+ QV A+AT +    L+ +ARE V+ S   V   +  G   YG+ TGFG  +  R        LQ+ L+    AG+          LP    RA +L+R N L +G SGIR   L+ +  +L   + P +P RG++ ASGDL PL+++A +L G   +    P      E +   EA ++AG     LQPKEGLAL +GT
Sbjct:    6 LDGETLTLEQVRAVATGAARAALAPAARERVRRSRALVDARLEDGEAHYGINTGFGTLAEVRIPRADLERLQRNLVLSHAAGV-------GAPLPLPEARALVLLRANVLAKGVSGIREHTLDLLLAMLERGVVPVVPERGSVGASGDLAPLAHLALVLIGDGEAFLAPPGAAGRPERLPGGEALRRAGLEPVVLQPKEGLALVNGT 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_LEGPH (Histidine ammonia-lyase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=hutH PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.874e-26
Identity = 67/203 (33.00%), Postives = 114/203 (56.16%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            L++  +  I     +  L+E++ E ++AS   V + +++    YG+ TGFG+ +++   +     KEL R +   +  +   +   LP       +L+++N L QGYSG+R E++ A+  L NH + PC+P +G++ ASGDLVPL++++  L G    +     G++I A+E  K AG    EL+ KEGLAL +G  V + LA
Sbjct:   12 LSLLSIKQILDEELSCVLAENSFELIRASHQTVKKVIDEKKTVYGINTGFGSLANQTISSD--CLKELQRNI---VLSHACGTGKLLPDDVVALILLLKINNLSQGYSGVRLELINALIALFNHKVYPCIPSKGSVGASGDLVPLAHLSLPLLGEGEVR---HQGQVISAEEGLKLAGLKPLELEAKEGLALLNGLQVSTALA 206          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_CITK8 (Histidine ammonia-lyase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=hutH PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.684e-25
Identity = 71/205 (34.63%), Postives = 114/205 (55.61%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            L+ AQ+ A+      + L  SA +G+ AS D V   + +G  +YG+ TGFG  +  R  T++   LQ+ L+    AGI          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + A+EA K+AG     L  KEGLAL +GT   +  A
Sbjct:   11 LSFAQLRAVWQQPVQLRLDSSAVDGINASVDCVNNIVAEGRTAYGINTGFGLLAQTRIATEDLQNLQRSLVLSHAAGI-------GEPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAEVWPLIPAKGSVGASGDLAPLAHMSLTLLGEGKARW---QGEWLPAKEALKKAGLEPITLAAKEGLALLNGTQASTAFA 205          
The following BLAST results are available for this feature:
BLAST of FC876377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
HUTH_LEGPA1.989e-2633.99Histidine ammonia-lyase OS=Legionella pneumophila ... [more]
HUTH_ANADE1.989e-2637.68Histidine ammonia-lyase OS=Anaeromyxobacter dehalo... [more]
HUTH_VIBCH3.394e-2633.66Histidine ammonia-lyase OS=Vibrio cholerae GN=hutH... [more]
HUTH_LEGPL4.432e-2634.98Histidine ammonia-lyase OS=Legionella pneumophila ... [more]
HUTH_LEGPC4.432e-2633.50Histidine ammonia-lyase OS=Legionella pneumophila ... [more]
HUTH_STIAU7.560e-2636.54Histidine ammonia-lyase OS=Stigmatella aurantiaca ... [more]
HUTH_ANASK7.560e-2637.20Histidine ammonia-lyase OS=Anaeromyxobacter sp. (s... [more]
HUTH_ANAD27.560e-2637.20Histidine ammonia-lyase OS=Anaeromyxobacter dehalo... [more]
HUTH_LEGPH9.874e-2633.00Histidine ammonia-lyase OS=Legionella pneumophila ... [more]
HUTH_CITK81.684e-2534.63Histidine ammonia-lyase OS=Citrobacter koseri (str... [more]

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Properties
Property NameValue
Genbank descriptionC32004A10EF DevOvary1 Citrus clementina cDNA clone C32004A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876377 ID=FC876377; Name=FC876377; organism=Citrus clementina; type=EST; length=728bp
GGGATGCGTTGAACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCAT
TTGGAGGAAGTGAAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAA
CCTCGGTGGTGAGACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGT
CCTCTACGAATGTGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCAAGGCC
AGCAGTGATTGGGTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGG
CGTTACCACTGGCTTTGGTGCCACTTCTCATCGGAGAACCAAGAACGGCG
GTGCTCTTCAGAAGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGA
AACGGAACAGAGTCATCTCACACGCTACCTCACTCAGCAACAAGGGCAGC
CATGCTTGTGAGGGTTAACACTCTTCTCCAGGGCTACTCCGGCATCCGAT
TTGAAATCCTGGAAGCGATCACAAAGCTGCTCAATCACAACATCACTCCA
TGCCTCCCTCTTCGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCT
TTCCTACATTGCCGGACTGCTCGCCGGCCGGCCCAATTCTAAGGCCACCG
GGCCTAATGGAGAGATCATTGATGCCCAGGAAGCCTCTAAACAAGCGGGT
TTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTTTGTCATGG
CACTGCTGTTGGTTCTGGCCTGGCTTCT
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