FC876377

Overview
NameFC876377
Unique NameFC876377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10441 contig Ccv1_Contig10441:221..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_PSYWF (Histidine ammonia-lyase OS=Psychrobacter sp. (strain PRwf-1) GN=hutH PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.200e-25
Identity = 72/204 (35.29%), Postives = 112/204 (54.90%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNG--GALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGL 722
            LT+AQ+  +  S   V L +SA + + AS D V E + +   +YG+ TGFG  +  R  +   G LQ  LI   + G       +   L     R  M+++V +L QG+SG+R ++++ +  L+NH+I P +P +G++ ASGDL PLS++   L G+        NG+ + A++A  QAG     L  KEGLAL +GT V + L
Sbjct:   14 LTLAQLRQVYDSPVQVSLDDSAYKDIDASHDCVKEIIARDKSAYGINTGFGLLAKTRISDDQLGLLQYNLIVSHSVG-------TGERLEDGVVRLIMVMKVASLAQGFSGVRRKVIDGLIGLINHDIIPHIPAKGSVGASGDLAPLSHMTLTLLGQGTCYI---NGQEMSAKDALAQAGLEPVTLAAKEGLALINGTQVSTAL 207          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_SHEWM (Histidine ammonia-lyase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=hutH PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.873e-25
Identity = 64/204 (31.37%), Postives = 116/204 (56.86%), Query Frame = 3
Query:  114 TLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            TLT++Q+  I+ +   +EL++ A   +  SS  V + +++G   YG+ TGFG  ++ + ++     K+L     + +  +   +   +  +  R  M++++N+L +G+SGIR E++  + +L+N  + PC+P +G++ ASGDL PLS+++  L G          G+I+ A+E  + AG    EL  KEGLAL +GT   + LA
Sbjct:   10 TLTLSQIRDISRNKLTLELADEAIADINISSGIVQKIIDEGRTVYGINTGFGLLANTKIED-----KDLQLLQRSIVLSHAAGTGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLIQLVNAEVYPCVPEKGSVGASGDLAPLSHMSLTLLGEGE---VSYKGQIMSAKEGLEIAGLEPIELAAKEGLALLNGTQASTALA 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_IDILO (Histidine ammonia-lyase OS=Idiomarina loihiensis GN=hutH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.752e-25
Identity = 62/188 (32.98%), Postives = 108/188 (57.45%), Query Frame = 3
Query:  162 VELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            ++LS+ A++ +  S+  V + + +G   YG+ TGFG  ++ R        + L       +  +   +   +  S  R  +L+++N+L +G+SG+R  +++A+ KLLN  + PC+P +G++ ASGDL PL+++   L G    +    NG++++A+E  K AG   FEL PKEGLAL +GT   + LA
Sbjct:   26 LKLSDEAKDNIATSAKTVADVLEQGRVVYGINTGFGLLANTRIP-----PERLTDLQRRIVLSHAAGTGDLMEDSVVRLMLLLKINSLSRGFSGVRQVLVDALIKLLNAEVYPCIPEKGSVGASGDLAPLAHMVLPLVGEGTVR---HNGKVLNAEEGLKIAGIEPFELAPKEGLALLNGTQASTALA 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_SHEPA (Histidine ammonia-lyase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=hutH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.400e-25
Identity = 68/206 (33.01%), Postives = 112/206 (54.37%), Query Frame = 3
Query:  114 TLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            TLT+AQ+  I+     +EL+ESA   +  S+  V + +++G   YG+ TGFG  ++ +        LQ+ ++    AG       +   +  +  R  M++++N+L +G+SGIR E++  +  L+N  + PC+P +G++ ASGDL PLS++   L G          G++I A E  + AG    EL  KEGLAL +GT   + LA
Sbjct:   10 TLTLAQIREISRGKVTLELAESAIADINTSAGLVQQVLDEGRTVYGINTGFGLLANTKIAADDLQLLQRSIVLSHAAG-------TGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLIALVNAGVYPCVPEKGSVGASGDLAPLSHMCLPLLGEGEMSY---QGQLISAAEGLEIAGLKPIELAAKEGLALLNGTQASTALA 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_GLOVI (Histidine ammonia-lyase OS=Gloeobacter violaceus GN=hutH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25
Identity = 74/211 (35.07%), Postives = 108/211 (51.18%), Query Frame = 3
Query:  102 LGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLAS 728
            L G +L V  + A+A     V LS ++ E V+ S  +V   +      YG+TTGFG   +RR        LQ+ L+    AG+                RA +L+R NTL QGYSG+R E L+ +  +LN  + P +P RG++ ASGDL PL+++A +L G   ++     GE++    A  +AG     L  KEGLAL +GT   S L +
Sbjct:   10 LDGCSLAVDDLVAVARGGVPVRLSPASLELVRRSRAFVEALLEGDEIVYGITTGFGYFKNRRIPRSAVEQLQQNLLMSSAAGL-------GEPFGREVVRAMLLLRANTLAQGYSGVRPETLQLLVAMLNRGVHPVVPCRGSVGASGDLAPLAHLALVLTGEGEAEV---GGEVLPGAAALARAGLEPIRLGAKEGLALINGTQAMSALGA 210          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_CHLSY (Histidine ammonia-lyase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=hutH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.862e-24
Identity = 76/208 (36.54%), Postives = 115/208 (55.29%), Query Frame = 3
Query:   96 VNLGGETLTVAQVAAIATSSTN---VELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAV 710
            V L GE+LT+ QV A+A        V L+  AR+ V+ ++  V + + +G  +YG+TTGFGA   R        Q E +++        G      +P   TRA ML+R NTL +G+SG+R + +E +  +LN  I P +P +G++ ASGDL PL+++A  L G    +     GE++ A  A ++ G+    L  KEGLAL +GTAV
Sbjct:    6 VILDGESLTIEQVLAVAYGQPGTPVVRLAPIARQRVERAAQAVQDLLARGVVAYGITTGFGAFKDRVIAPD---QVERLQYNILVSHAVGVGPVFDIP--TTRAIMLIRANTLARGHSGVRLQTVERLLDMLNQGIHPRIPCKGSLGASGDLAPLAHMALPLIGLGEVEW---QGEVLPAATALERLGWQPLHLAAKEGLALTNGTAV 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_CHLAA (Histidine ammonia-lyase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=hutH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.862e-24
Identity = 76/208 (36.54%), Postives = 115/208 (55.29%), Query Frame = 3
Query:   96 VNLGGETLTVAQVAAIATSSTN---VELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAV 710
            V L GE+LT+ QV A+A        V L+  AR+ V+ ++  V + + +G  +YG+TTGFGA   R        Q E +++        G      +P   TRA ML+R NTL +G+SG+R + +E +  +LN  I P +P +G++ ASGDL PL+++A  L G    +     GE++ A  A ++ G+    L  KEGLAL +GTAV
Sbjct:    6 VILDGESLTIEQVLAVAYGQPGTPVVRLAPIARQRVERAAQAVQDLLARGVVAYGITTGFGAFKDRVIAPD---QVERLQYNILVSHAVGVGPVFDIP--TTRAIMLIRANTLARGHSGVRLQTVERLLDMLNQGIHPRIPCKGSLGASGDLAPLAHMALPLIGLGEVEW---QGEVLPAATALERLGWQPLHLAAKEGLALTNGTAV 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_SHESH (Histidine ammonia-lyase OS=Shewanella sediminis (strain HAW-EB3) GN=hutH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24
Identity = 65/206 (31.55%), Postives = 114/206 (55.34%), Query Frame = 3
Query:  114 TLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            TLT++Q+  I+    ++EL++SA   +  S+  V + +++G   YG+ TGFG  ++ +        LQ+ ++    AG       +   +  +  R  M++++N+L +G+SGIR E++  +  L+N  + PC+P +G++ ASGDL PL+++   L G          G+I+ A+E  + AG    EL  KEGLAL +GT   + LA
Sbjct:   10 TLTLSQIREISRGKVSLELADSAINDINTSAGLVQQVLDEGRTVYGINTGFGLLANTKIAADDLQLLQRSIVLSHAAG-------TGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLIALVNAEVYPCVPEKGSVGASGDLAPLAHMCLPLLGEGEMSY---KGQILSAKEGLEIAGLKPIELAAKEGLALLNGTQASTALA 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_DESPS (Histidine ammonia-lyase OS=Desulfotalea psychrophila GN=hutH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24
Identity = 69/205 (33.66%), Postives = 111/205 (54.15%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            LT+A++  +A +   V L E  +  + AS   V E + +G   YG+ TGFG  ++    N     LQ+ LI    AG+          +  S  R  M++++N+L +GYSGIR E++EA+ +LLN  + P +P +G++ ASGDL PL++++ +L G   +      G+ +  +E  + AG     L PKEGLAL +GT   +  A
Sbjct:   12 LTLAELRRMAKAPVGVRLEEKCKGKINASVQTVGEVIRQGRVIYGINTGFGLLANTIIPNEELEHLQRSLILSHAAGV-------GAFMADSTVRLMMVLKINSLARGYSGIRLEVIEALVQLLNAEVYPSVPQKGSVGASGDLAPLAHMSIVLLGEGEASY---RGQRLSGREGLELAGLSPITLGPKEGLALLNGTQASTAFA 206          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_VIBF1 (Histidine ammonia-lyase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=hutH PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24
Identity = 65/205 (31.71%), Postives = 115/205 (56.10%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            L++ Q+  ++   T + L  +A   +  S+D V + + +G   YG+ TGFG  ++ R   K+   LQ+ ++    AGI          +  +  R  M++++N+L +GYSGIR  +++A+ +L+N  + PC+P +G++ ASGDL PL++++ +L G   ++     GE+I  + A + AG     L PKEGLAL +GT   +  A
Sbjct:   11 LSLKQLREVSRHPTKLSLDPNALPDMLISADVVAQVIEEGKTVYGINTGFGLLANTRIAEKDLETLQRSIVLSHAAGI-------GEFMDDATVRLMMVLKINSLARGYSGIRPLVIDALIQLVNSEVYPCIPKKGSVGASGDLAPLAHMSTVLLGEGEARY---RGEVITGKTALEIAGLTPITLAPKEGLALLNGTQASTAFA 205          
The following BLAST results are available for this feature:
BLAST of FC876377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
HUTH_PSYWF2.200e-2535.29Histidine ammonia-lyase OS=Psychrobacter sp. (stra... [more]
HUTH_SHEWM2.873e-2531.37Histidine ammonia-lyase OS=Shewanella woodyi (stra... [more]
HUTH_IDILO3.752e-2532.98Histidine ammonia-lyase OS=Idiomarina loihiensis G... [more]
HUTH_SHEPA6.400e-2533.01Histidine ammonia-lyase OS=Shewanella pealeana (st... [more]
HUTH_GLOVI8.358e-2535.07Histidine ammonia-lyase OS=Gloeobacter violaceus G... [more]
HUTH_CHLSY1.862e-2436.54Histidine ammonia-lyase OS=Chloroflexus aurantiacu... [more]
HUTH_CHLAA1.862e-2436.54Histidine ammonia-lyase OS=Chloroflexus aurantiacu... [more]
HUTH_SHESH2.432e-2431.55Histidine ammonia-lyase OS=Shewanella sediminis (s... [more]
HUTH_DESPS2.432e-2433.66Histidine ammonia-lyase OS=Desulfotalea psychrophi... [more]
HUTH_VIBF14.148e-2431.71Histidine ammonia-lyase OS=Vibrio fischeri (strain... [more]

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Properties
Property NameValue
Genbank descriptionC32004A10EF DevOvary1 Citrus clementina cDNA clone C32004A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876377 ID=FC876377; Name=FC876377; organism=Citrus clementina; type=EST; length=728bp
GGGATGCGTTGAACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCAT
TTGGAGGAAGTGAAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAA
CCTCGGTGGTGAGACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGT
CCTCTACGAATGTGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCAAGGCC
AGCAGTGATTGGGTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGG
CGTTACCACTGGCTTTGGTGCCACTTCTCATCGGAGAACCAAGAACGGCG
GTGCTCTTCAGAAGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGA
AACGGAACAGAGTCATCTCACACGCTACCTCACTCAGCAACAAGGGCAGC
CATGCTTGTGAGGGTTAACACTCTTCTCCAGGGCTACTCCGGCATCCGAT
TTGAAATCCTGGAAGCGATCACAAAGCTGCTCAATCACAACATCACTCCA
TGCCTCCCTCTTCGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCT
TTCCTACATTGCCGGACTGCTCGCCGGCCGGCCCAATTCTAAGGCCACCG
GGCCTAATGGAGAGATCATTGATGCCCAGGAAGCCTCTAAACAAGCGGGT
TTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTTTGTCATGG
CACTGCTGTTGGTTCTGGCCTGGCTTCT
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