FC876377

Overview
NameFC876377
Unique NameFC876377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10441 contig Ccv1_Contig10441:221..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_MYXXD (Histidine ammonia-lyase OS=Myxococcus xanthus (strain DK 1622) GN=hutH PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24
Identity = 75/208 (36.06%), Postives = 113/208 (54.33%), Query Frame = 3
Query:   87 KPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGT 704
            +P + + G+TL + ++  +A +   VELS  A   V+AS   V       T +YG+ TGFG  +  R   K+   LQ+ LI     G+   GT     LP    RA +L+R N L +GYSGIR E L     +LN ++ P +P RG++ ASGDL PL+++A +  G   +      G+ + A++A ++AG     L+ KEGLAL +GT
Sbjct:    3 RPRILIDGDTLKLEEILQVARNEATVELSPDAATRVRASRALVDRVAAGDTPAYGINTGFGTLAEVRIDKKDLRDLQRNLILSHACGV---GTP----LPLPEARALLLLRCNVLAKGYSGIRMETLALALDMLNRDVVPVVPERGSVGASGDLAPLAHLALVFIGEGEAFY---QGQRMPAKQALERAGLQPVVLEAKEGLALVNGT 200          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_THEAC (Probable histidine ammonia-lyase OS=Thermoplasma acidophilum GN=hutH PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24
Identity = 68/214 (31.78%), Postives = 117/214 (54.67%), Query Frame = 3
Query:   93 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGA--TSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLAS 728
            ++ + G +L V  V A+A     V +S+   + V+   +  ++ +N G   YGV TGFG+    H        LQK LIR  ++G+ G+  E+ +       RA M VR+N+L  GYS +  ++L  + ++LN ++ P +P  G++ ASGDL PL++I   + G   +      G ++D+  A ++AG   ++ + KEG+AL +GT+  SG+ S
Sbjct:    1 MIEIDGRSLRVEDVYAVAVEYDRVSISDDTLKAVEEKHEAFLKLINSGKTVYGVNTGFGSLLNVHIERDQEIELQKNLIRSHSSGV-GDYLENRYV------RAIMAVRLNSLAAGYSAVSADLLNMMVEMLNRDVIPAVPKYGSVGASGDLAPLAHIGLAMMGEGKAFF---EGRLMDSARALEKAGLKPYQFKEKEGVALINGTSFMSGILS 204          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_THEVO (Probable histidine ammonia-lyase OS=Thermoplasma volcanium GN=hutH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24
Identity = 66/212 (31.13%), Postives = 115/212 (54.25%), Query Frame = 3
Query:   93 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGL 722
            ++ + G+ LT+  V +++     VELS  AR  V       ++ ++ G   YGV TGFG   + +        LQ+ LIR  +AG+          LP    R+ M++R NTL +GYS +  E+++A+  ++N ++ P +P  G++ ASGDL PL++I   + G   +     NGE++ +  A  + G   +E + KEG+AL +GT++ +G+
Sbjct:    1 MIEIDGDNLTLEDVYSVSVLHEPVELSTKARNKVAEIHRKFLDLISSGQTIYGVNTGFGGLLNIKISREEEIELQRNLIRSHSAGV-------GKYLPTDVVRSIMVIRANTLAKGYSAVSTELIDALLAMINKDVVPAVPEFGSVGASGDLAPLAHIGLAMMGEGQAFL---NGELMRSDIALSKVGLKPYEFKEKEGVALINGTSMMAGI 202          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_PSEFS (Histidine ammonia-lyase OS=Pseudomonas fluorescens (strain SBW25) GN=hutH PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24
Identity = 70/212 (33.02%), Postives = 118/212 (55.66%), Query Frame = 3
Query:   96 VNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            +NL    L++AQ+ AI      + L +SA   ++AS   V + + +   +YG+ TGFG  +  R  +     LQ+ L+    AG+          +  +  R  M+++VN+L +G+SGIR ++++A+  L+N  + P +PL+G++ ASGDL PL++++ +L G   ++     GE ++A EA K AG     L  KEGLAL +GT V +  A
Sbjct:    6 LNLIPGQLSLAQLRAIYQQPVTLRLDDSATAQIEASVACVEQILAENRTAYGINTGFGLLASTRIASEDLENLQRSLVLSHAAGV-------GEPISDALVRLVMVLKVNSLSRGFSGIRRQVIDALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEGKARY---KGEWLEATEALKVAGLTPLTLAAKEGLALLNGTQVSTAYA 207          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_VIBVU (Histidine ammonia-lyase OS=Vibrio vulnificus GN=hutH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.241e-24
Identity = 66/205 (32.20%), Postives = 112/205 (54.63%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            L++ Q+  ++ S  N+ L  SA   ++ S+  V   + +    YG+ TGFG  ++ R   ++   LQ+ ++    AGI          +     R  M++++N+L +GYSGIR  +++ +  L+N  + PC+P +G++ ASGDL PL++++ +L G   ++    NG+II   EA K AG     L PKEGLAL +GT   +  A
Sbjct:   13 LSLNQLRQVSRSPINLSLDASAIPAIEESTQVVERVIAEDRTVYGINTGFGLLANTRIAPEDLETLQRSIVLSHAAGI-------GEFMADETVRLMMVLKINSLSRGYSGIRLNVIQMLIDLVNAQVYPCVPQKGSVGASGDLAPLAHMSTVLLGEGQAR---HNGKIISGLEALKIAGLEPITLAPKEGLALLNGTQASTAFA 207          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_PSYIN (Histidine ammonia-lyase OS=Psychromonas ingrahamii (strain 37) GN=hutH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.241e-24
Identity = 66/198 (33.33%), Postives = 111/198 (56.06%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGT 704
            LT++Q+  I+  +  V L  S  E + AS+  V + + +   +YG+ TGFG  ++ R   ++   LQ+ ++    AGI          +     R  M++++N+L +G+SGIR  ++EA+  L+N  I PC+P +G++ ASGDL PL++++ +L G   ++     G II   +A + AG     L PKEGLAL +GT
Sbjct:   11 LTLSQLRKISRHALKVSLESSCIEAIHASTQVVNQVIAENRVAYGINTGFGLLANTRIAPEDLETLQRSIVLSHAAGI-------GELMNDETVRMMMVLKINSLARGFSGIRLSVIEALMTLVNAQIYPCVPKKGSVGASGDLAPLAHMSTVLLGEGEARY---QGNIISGAKALEIAGMQPITLAPKEGLALLNGT 198          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_VIBVY (Histidine ammonia-lyase OS=Vibrio vulnificus (strain YJ016) GN=hutH PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23
Identity = 66/205 (32.20%), Postives = 112/205 (54.63%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            L++ Q+  ++ S  N+ L  SA   ++ S+  V   + +    YG+ TGFG  ++ R   ++   LQ+ ++    AGI          +     R  M++++N+L +GYSGIR  +++ +  L+N  + PC+P +G++ ASGDL PL++++ +L G   ++    NG+II   EA K AG     L PKEGLAL +GT   +  A
Sbjct:   13 LSLNQLRQVSRSPINLSLDASAIPAIEDSTQVVERVIAEDRTVYGINTGFGLLANTRIAPEDLETLQRSIVLSHAAGI-------GEFMADETVRLMMVLKINSLSRGYSGIRLNVIQMLIDLVNAQVYPCVPQKGSVGASGDLAPLAHMSTVLLGEGQAR---HNGKIISGLEALKIAGLEPITLAPKEGLALLNGTQASTAFA 207          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_YERE8 (Histidine ammonia-lyase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=hutH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23
Identity = 68/205 (33.17%), Postives = 116/205 (56.59%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            +T+A +  I      + L ESA   ++ S D V + + +   +YG+ TGFG  +  R  T++   LQ+ ++    AG+   G  +   +     R  M++++N+L +G+SGIR E+++A+  L+N  + P +PL+G++ ASGDL PL++++ LL G   ++     GE +DA+ A  +AG     L  KEGLAL +GT V +  A
Sbjct:    8 MTLADLRHIYQHPVKITLDESAYAPIQQSVDCVQKILAEKRTAYGINTGFGLLASTRIATEDLENLQRSIVLSHAAGV---GEPNDDAI----VRLIMVLKINSLARGFSGIRLEVIQALITLVNAQVYPHIPLKGSVGASGDLAPLAHMSLLLLGEGKARY---QGEWLDARAALAKAGLQPLTLAAKEGLALLNGTQVSTAYA 202          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_KLEP3 (Histidine ammonia-lyase OS=Klebsiella pneumoniae (strain 342) GN=hutH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23
Identity = 66/205 (32.20%), Postives = 111/205 (54.15%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            L+++Q+  + +   N+ L  SA   +  S   V   + +G  +YG+ TGFG  +  R  T +   LQ+ L+    AG+          L     R  M++++N+L +G+SGIR  +++A+  L+N  +TP +P +G++ ASGDL PL++++  L G   ++  G  GE + A +A +QAG     L  KEGLAL +GT   +  A
Sbjct:   11 LSLSQLREVYSHPLNITLDSSAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTDDLENLQRSLVLSHAAGV-------GEPLDDDLARLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRG--GEWLPATDALRQAGLEPITLAAKEGLALLNGTQASTAFA 206          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_GEOKA (Histidine ammonia-lyase OS=Geobacillus kaustophilus GN=hutH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23
Identity = 71/206 (34.47%), Postives = 105/206 (50.97%), Query Frame = 3
Query:   93 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAV 710
            ++ L G TLT+ +V  +      V   E +   V+ S   V ++++ G   YGV TGFG  +  R + G  L++  I  L +     G            RA +L+R N LL+GYSG+R  ++E +   LN  I P +P +G++ ASGDL PL+++A   AG   +      G  + A +A  QAG     LQ KEGLAL +GT V
Sbjct:    1 MIVLTGHTLTIDEVRRVVYERERVAADEESMRAVEKSRAAVEQAISNGRTIYGVNTGFGKLADVRIE-GSDLEQLQINLLRSHACAVG----EPFAEDVVRAMLLLRANALLKGYSGVRPAVIEQLLAFLNTGIHPIVPQQGSLGASGDLAPLAHLALAFAGEGEAMY---QGRRMPAAQALSQAGISPLSLQEKEGLALINGTQV 198          
The following BLAST results are available for this feature:
BLAST of FC876377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
HUTH_MYXXD4.148e-2436.06Histidine ammonia-lyase OS=Myxococcus xanthus (str... [more]
HUTH_THEAC5.418e-2431.78Probable histidine ammonia-lyase OS=Thermoplasma a... [more]
HUTH_THEVO7.076e-2431.13Probable histidine ammonia-lyase OS=Thermoplasma v... [more]
HUTH_PSEFS7.076e-2433.02Histidine ammonia-lyase OS=Pseudomonas fluorescens... [more]
HUTH_VIBVU9.241e-2432.20Histidine ammonia-lyase OS=Vibrio vulnificus GN=hu... [more]
HUTH_PSYIN9.241e-2433.33Histidine ammonia-lyase OS=Psychromonas ingrahamii... [more]
HUTH_VIBVY1.207e-2332.20Histidine ammonia-lyase OS=Vibrio vulnificus (stra... [more]
HUTH_YERE82.689e-2333.17Histidine ammonia-lyase OS=Yersinia enterocolitica... [more]
HUTH_KLEP32.689e-2332.20Histidine ammonia-lyase OS=Klebsiella pneumoniae (... [more]
HUTH_GEOKA2.689e-2334.47Histidine ammonia-lyase OS=Geobacillus kaustophilu... [more]

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Properties
Property NameValue
Genbank descriptionC32004A10EF DevOvary1 Citrus clementina cDNA clone C32004A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876377 ID=FC876377; Name=FC876377; organism=Citrus clementina; type=EST; length=728bp
GGGATGCGTTGAACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCAT
TTGGAGGAAGTGAAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAA
CCTCGGTGGTGAGACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGT
CCTCTACGAATGTGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCAAGGCC
AGCAGTGATTGGGTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGG
CGTTACCACTGGCTTTGGTGCCACTTCTCATCGGAGAACCAAGAACGGCG
GTGCTCTTCAGAAGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGA
AACGGAACAGAGTCATCTCACACGCTACCTCACTCAGCAACAAGGGCAGC
CATGCTTGTGAGGGTTAACACTCTTCTCCAGGGCTACTCCGGCATCCGAT
TTGAAATCCTGGAAGCGATCACAAAGCTGCTCAATCACAACATCACTCCA
TGCCTCCCTCTTCGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCT
TTCCTACATTGCCGGACTGCTCGCCGGCCGGCCCAATTCTAAGGCCACCG
GGCCTAATGGAGAGATCATTGATGCCCAGGAAGCCTCTAAACAAGCGGGT
TTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTTTGTCATGG
CACTGCTGTTGGTTCTGGCCTGGCTTCT
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