FC876377

Overview
NameFC876377
Unique NameFC876377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_TREDE (Histidine ammonia-lyase OS=Treponema denticola GN=hutH PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 69/213 (32.39%), Postives = 115/213 (53.99%), Query Frame = 3
Query:   96 VNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRR-TKN-GGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLAS 728
            V + G +LT+  V A+A     V+LS  A++ +K S   V + +  G  +YG++TGFG  S    TK+  GALQ+ LI     G+        +  P    RA ML+R+NT   G+SG+   + + +  +LN  + P +P +G++ ASGDL  L++IA ++ G   +      G++++ + A  +AG     L  K+GL + +GT V SG+ +
Sbjct:    6 VTVTGSSLTIEDVVAVARHGAEVKLSADAKKRIKDSKKIVDDIVKSGKPTYGISTGFGELSTVTITKDQNGALQRNLILSHACGV-------GNPFPEDIVRAIMLLRLNTHASGFSGVTPSVPDILVDMLNKGVIPYVPEKGSLGASGDLANLAHIALVMIGEGKAYY---EGKLMEGKAALAKAGLKPVVLSGKDGLGIINGTPVMSGIGA 208          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_YERPS (Histidine ammonia-lyase OS=Yersinia pseudotuberculosis GN=hutH PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23
Identity = 68/205 (33.17%), Postives = 114/205 (55.61%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            +T+A +  I     ++ L ESA   ++ S D V   + +   +YG+ TGFG  +  R  T++   LQ+ ++    AG+ G   + +        R  M++++N+L +G+SGIR E+++A+  L+N  + P +PL+G++ ASGDL PL++++ LL G   ++     GE + A  A  QAG     L  KEGLAL +GT V +  A
Sbjct:   11 MTLADLRHIYQHPVHITLDESAYVPIQQSVDCVQAILAEQRTAYGINTGFGLLASTRIATEDLENLQRSIVLSHAAGV-GEANDDA------IVRLIMVLKINSLARGFSGIRLEVIQALITLVNAGVYPHIPLKGSVGASGDLAPLAHMSLLLLGEGKARY---QGEWLPAHTALAQAGLQPLTLAAKEGLALLNGTQVSAAYA 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_YERPE (Histidine ammonia-lyase OS=Yersinia pestis GN=hutH PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23
Identity = 68/205 (33.17%), Postives = 114/205 (55.61%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRR--TKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            +T+A +  I     ++ L ESA   ++ S D V   + +   +YG+ TGFG  +  R  T++   LQ+ ++    AG+ G   + +        R  M++++N+L +G+SGIR E+++A+  L+N  + P +PL+G++ ASGDL PL++++ LL G   ++     GE + A  A  QAG     L  KEGLAL +GT V +  A
Sbjct:   11 MTLADLRHIYQHPVHITLDESAYVPIQQSVDCVQAILAEQRTAYGINTGFGLLASTRIATEDLENLQRSIVLSHAAGV-GEANDDA------IVRLIMVLKINSLARGFSGIRLEVIQALITLVNAGVYPHIPLKGSVGASGDLAPLAHMSLLLLGEGKARY---QGEWLPAHTALAQAGLQPLTLAAKEGLALLNGTQVSAAYA 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_VIBPA (Histidine ammonia-lyase OS=Vibrio parahaemolyticus GN=hutH PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23
Identity = 62/205 (30.24%), Postives = 112/205 (54.63%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            +++ ++  ++ S  N+ L   A  G++ S+  V   + +    YG+ TGFG  ++ R   ++   LQ+ ++    AGI          +     R  M++++N+L +G+SGIR +++  +  L+N  + PC+P +G++ ASGDL PL++++ +L G   ++    NG+I+   EA K AG     L PKEGLAL +GT   +  A
Sbjct:   11 ISLNELRQVSRSPVNLTLDPEAIPGIEESTQVVDRVIAEDRTVYGINTGFGLLANTRIAPEDLETLQRSIVLSHAAGI-------GKFMSDETVRLMMVLKINSLARGFSGIRLKVINMLIDLVNAQVYPCVPQKGSVGASGDLAPLAHMSTVLLGEGQAR---HNGQIVSGYEALKIAGLEPITLAPKEGLALLNGTQASTAFA 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_SHEPW (Histidine ammonia-lyase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=hutH PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23
Identity = 67/207 (32.37%), Postives = 113/207 (54.59%), Query Frame = 3
Query:  114 TLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIA-GLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            +LT+ Q+  I+     +EL++SA   +  S+  V + +++G   YG+ TGFG  ++ +        LQ+ ++    AG       +   +  +  R  M++++N+L +G+SGIR E++  +  L+N  + PC+P +G++ ASGDL PLS++   LLA    S      G++I A E  + AG    EL  KEGLAL +GT   + LA
Sbjct:   10 SLTLKQIREISRGKVTLELADSAIADINTSAGLVQQVLDEGRTVYGINTGFGLLANTKIAADDLQLLQRSIVLSHAAG-------TGQYMQDATVRLMMVLKINSLSRGFSGIRLEVINFLIALVNAEVYPCVPEKGSVGASGDLAPLSHMCLPLLAEGEMSY----KGQLITAAEGLEIAGLKPLELAAKEGLALLNGTQASTALA 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_SALTY (Histidine ammonia-lyase OS=Salmonella typhimurium GN=hutH PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23
Identity = 67/205 (32.68%), Postives = 111/205 (54.15%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            L+++Q+  I      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL +GT   +  A
Sbjct:   11 LSLSQLYDIWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFA 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_SALPB (Histidine ammonia-lyase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=hutH PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23
Identity = 67/205 (32.68%), Postives = 111/205 (54.15%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            L+++Q+  I      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL +GT   +  A
Sbjct:   11 LSLSQLYDIWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFA 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH2_FUSNN (Histidine ammonia-lyase 2 OS=Fusobacterium nucleatum subsp. nucleatum GN=hutH2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23
Identity = 62/211 (29.38%), Postives = 108/211 (51.18%), Query Frame = 3
Query:   93 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            ++ + G  LT+  V A+A     V+L E  ++ +  S  +V E+++     YG+ TGFG     + +N    ++EL       I+ +             RA M++R N + +G+SG+  E +E +  +LN  + P +  +G++ +SGDL PL+++   + G   ++     GEI+  +EA K+AG     L+ KEGLAL +GT    G A
Sbjct:    4 IIEINGSNLTIEDVVAVARYGAKVKLDEKQKDKILESRKYVEEALSNKMPIYGINTGFG-----KFENVPISEEELELLQKNLIYSDACGVGEAFDTEIVRAMMILRANAISKGFSGVMIETVECLLNMLNAGVHPIVRSKGSVGSSGDLCPLAHMVLPMIGEGEAEY---KGEILSGKEAMKKAGVSTITLKAKEGLALINGTQAMMGNA 206          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_SALTI (Histidine ammonia-lyase OS=Salmonella typhi GN=hutH PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 66/205 (32.20%), Postives = 111/205 (54.15%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL +GT   +  A
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQAALKKAGLEPVALAAKEGLALLNGTQASTAFA 205          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_SALSV (Histidine ammonia-lyase OS=Salmonella schwarzengrund (strain CVM19633) GN=hutH PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 66/205 (32.20%), Postives = 111/205 (54.15%), Query Frame = 3
Query:  117 LTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGA--LQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLA 725
            L+++Q+  +      + L  SA +G+ AS   V + + +G  +YG+ TGFG  +  R  +     LQ+ L+    AG+          L  +  R  M++++N+L +G+SGIR  ++EA+  L+N  + P +P +G++ ASGDL PL++++  L G   ++     GE + AQ A K+AG     L  KEGLAL +GT   +  A
Sbjct:   11 LSLSQLYDVWRHPVQLRLDASAIDGINASVACVNDIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGV-------GDPLDDAMVRLIMVLKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGEGKARW---QGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFA 205          
The following BLAST results are available for this feature:
BLAST of FC876377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
HUTH_TREDE5.990e-2332.39Histidine ammonia-lyase OS=Treponema denticola GN=... [more]
HUTH_YERPS7.823e-2333.17Histidine ammonia-lyase OS=Yersinia pseudotubercul... [more]
HUTH_YERPE7.823e-2333.17Histidine ammonia-lyase OS=Yersinia pestis GN=hutH... [more]
HUTH_VIBPA7.823e-2330.24Histidine ammonia-lyase OS=Vibrio parahaemolyticus... [more]
HUTH_SHEPW7.823e-2332.37Histidine ammonia-lyase OS=Shewanella piezotoleran... [more]
HUTH_SALTY7.823e-2332.68Histidine ammonia-lyase OS=Salmonella typhimurium ... [more]
HUTH_SALPB7.823e-2332.68Histidine ammonia-lyase OS=Salmonella paratyphi B ... [more]
HUTH2_FUSNN7.823e-2329.38Histidine ammonia-lyase 2 OS=Fusobacterium nucleat... [more]
HUTH_SALTI1.022e-2232.20Histidine ammonia-lyase OS=Salmonella typhi GN=hut... [more]
HUTH_SALSV1.022e-2232.20Histidine ammonia-lyase OS=Salmonella schwarzengru... [more]

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Properties
Property NameValue
Genbank descriptionC32004A10EF DevOvary1 Citrus clementina cDNA clone C32004A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876377 ID=FC876377; Name=FC876377; organism=Citrus clementina; type=EST; length=728bp
GGGATGCGTTGAACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCAT
TTGGAGGAAGTGAAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAA
CCTCGGTGGTGAGACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGT
CCTCTACGAATGTGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCAAGGCC
AGCAGTGATTGGGTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGG
CGTTACCACTGGCTTTGGTGCCACTTCTCATCGGAGAACCAAGAACGGCG
GTGCTCTTCAGAAGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGA
AACGGAACAGAGTCATCTCACACGCTACCTCACTCAGCAACAAGGGCAGC
CATGCTTGTGAGGGTTAACACTCTTCTCCAGGGCTACTCCGGCATCCGAT
TTGAAATCCTGGAAGCGATCACAAAGCTGCTCAATCACAACATCACTCCA
TGCCTCCCTCTTCGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCT
TTCCTACATTGCCGGACTGCTCGCCGGCCGGCCCAATTCTAAGGCCACCG
GGCCTAATGGAGAGATCATTGATGCCCAGGAAGCCTCTAAACAAGCGGGT
TTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTTTGTCATGG
CACTGCTGTTGGTTCTGGCCTGGCTTCT
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