FC876383

Overview
NameFC876383
Unique NameFC876383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876383_ssr24 microsatellite FC876383_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:1..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP90_EIMTE (Heat shock protein 90 OS=Eimeria tenella GN=HSP90 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 3.431e-43
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 3 
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            ETFAF A+I QL+SLIINTFYSNKEIFLRELISN+SDAL KIR+E++T+  KL  +PELFI +IPDK NNTL+I +SGIGMTKADLVNNLGTIARSGTK FMEAL AG D+S
Sbjct:    5 ETFAFNADIQQLMSLIINTFYSNKEIFLRELISNASDALDKIRYEAITEPEKLKTKPELFIRLIPDKANNTLTIENSGIGMTKADLVNNLGTIARSGTKAFMEALQAGGDIS 116
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP83_TRYBB (Heat shock protein 83 OS=Trypanosoma brucei brucei GN=HSP83 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 7.644e-43
Identity = 88/113 (77.88%), Postives = 99/113 (87.61%), Query Frame = 3 
Query:  129 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            TETFAFQAEINQL+SLIINTFYSNKEIFLRELISNSSDA  KIR++SLT++S L  +P L I +IPD+ N TL++ DSGIGMTKADLVNNLGTIARSGTK FMEAL AG D+S
Sbjct:    2 TETFAFQAEINQLMSLIINTFYSNKEIFLRELISNSSDACDKIRYQSLTNQSVLGDEPHLRIRVIPDRVNKTLTVEDSGIGMTKADLVNNLGTIARSGTKSFMEALEAGGDMS 114
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HS90B_BOVIN (Heat shock protein HSP 90-beta OS=Bos taurus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 9.984e-43
Identity = 89/114 (78.07%), Postives = 100/114 (87.72%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDAL KIR+ESLTD SKLD+  EL I IIP+    TL+++D+GIGMTKADLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADIS 124
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP90_PODAN (Heat shock protein 90 homolog OS=Podospora anserina GN=MOD-E PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.304e-42
Identity = 89/112 (79.46%), Postives = 99/112 (88.39%), Query Frame = 3 
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            ETF FQAEI+QLLSLIINT YSNKEIFLREL+SN+SDAL KIR+ESL+D SKLD   +L I IIPDK N TL+I D+GIGMTKADLVNNLGTIARSGTK+FMEAL AGAD+S
Sbjct:    3 ETFEFQAEISQLLSLIINTVYSNKEIFLRELVSNASDALDKIRYESLSDPSKLDTGKDLRIDIIPDKENKTLTIQDTGIGMTKADLVNNLGTIARSGTKQFMEALTAGADIS 114
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HS90B_RAT (Heat shock protein HSP 90-beta OS=Rattus norvegicus GN=Hsp90ab1 PE=1 SV=4)

HSP 1 Score: 171.785 bits (434), Expect = 1.304e-42
Identity = 88/114 (77.19%), Postives = 100/114 (87.72%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDAL KIR+ESLTD SKLD+  EL I IIP+    TL+++D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 124
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HS90B_PONAB (Heat shock protein HSP 90-beta OS=Pongo abelii GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.304e-42
Identity = 88/114 (77.19%), Postives = 100/114 (87.72%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDAL KIR+ESLTD SKLD+  EL I IIP+    TL+++D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 124
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HS90B_MACFA (Heat shock protein HSP 90-beta OS=Macaca fascicularis GN=Hsp90ab1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.304e-42
Identity = 88/114 (77.19%), Postives = 100/114 (87.72%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDAL KIR+ESLTD SKLD+  EL I IIP+    TL+++D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 124
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HS90B_HUMAN (Heat shock protein HSP 90-beta OS=Homo sapiens GN=HSP90AB1 PE=1 SV=4)

HSP 1 Score: 171.785 bits (434), Expect = 1.304e-42
Identity = 88/114 (77.19%), Postives = 100/114 (87.72%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDAL KIR+ESLTD SKLD+  EL I IIP+    TL+++D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 124
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HS90B_HORSE (Heat shock protein HSP 90-beta OS=Equus caballus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 1.304e-42
Identity = 88/114 (77.19%), Postives = 100/114 (87.72%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDAL KIR+ESLTD SKLD+  EL I IIP+    TL+++D+GIGMTKADL+NNLGTIA+SGTK FMEAL AGAD+S
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADIS 124
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP83_LEIIN (Heat shock protein 83-1 OS=Leishmania infantum GN=HSP83-1 PE=3 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.703e-42
Identity = 87/113 (76.99%), Postives = 97/113 (85.84%), Query Frame = 3 
Query:  129 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            TETFAFQAEINQL+SLIINTFYSNKEIFLRELISN+SDA  KIR++SLTD S L   P L I ++PDK N TL++ D+GIGMTKADLVNNLGTIARSGTK FMEAL AG D+S
Sbjct:    2 TETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMS 114
The following BLAST results are available for this feature:
BLAST of FC876383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HSP90_EIMTE3.431e-4377.68Heat shock protein 90 OS=Eimeria tenella GN=HSP90 ... [more]
HSP83_TRYBB7.644e-4377.88Heat shock protein 83 OS=Trypanosoma brucei brucei... [more]
HS90B_BOVIN9.984e-4378.07Heat shock protein HSP 90-beta OS=Bos taurus GN=HS... [more]
HSP90_PODAN1.304e-4279.46Heat shock protein 90 homolog OS=Podospora anserin... [more]
HS90B_RAT1.304e-4277.19Heat shock protein HSP 90-beta OS=Rattus norvegicu... [more]
HS90B_PONAB1.304e-4277.19Heat shock protein HSP 90-beta OS=Pongo abelii GN=... [more]
HS90B_MACFA1.304e-4277.19Heat shock protein HSP 90-beta OS=Macaca fascicula... [more]
HS90B_HUMAN1.304e-4277.19Heat shock protein HSP 90-beta OS=Homo sapiens GN=... [more]
HS90B_HORSE1.304e-4277.19Heat shock protein HSP 90-beta OS=Equus caballus G... [more]
HSP83_LEIIN1.703e-4276.99Heat shock protein 83-1 OS=Leishmania infantum GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32004B04EF DevOvary1 Citrus clementina cDNA clone C32004B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876383 ID=FC876383; Name=FC876383; organism=Citrus clementina; type=EST; length=467bp
GGAAACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTT
CGCTTCCAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGG
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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