FC876383

Overview
NameFC876383
Unique NameFC876383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_PROVI (Chaperone protein htpG OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=htpG PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.958e-22
Identity = 54/105 (51.43%), Postives = 75/105 (71.43%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            + F ++AE+ QLL LI+++ Y++ EIFLREL+SN++DAL K RF SLTD   + A  E  IHI  DK      I DSGIGM++ +L+ NLGT+A+SGT  FM++L
Sbjct:   10 QEFEYKAEMKQLLDLIVHSLYTHPEIFLRELVSNAADALSKARFSSLTDGGLMAAAGEDAIHITLDKEKLLFVIEDSGIGMSEDELIANLGTVAKSGTLGFMQSL 114          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_DESPS (Chaperone protein htpG OS=Desulfotalea psychrophila GN=htpG PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.958e-22
Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +E + + FQAE  +LL ++IN+ Y+ +++F+RELISNS+DAL K+R E+LT +  LD    L I I  D+  +TL+I DSGIGMT+ +LVNNLG IA SG+  F   LA
Sbjct:    2 TEAKNYEFQAETKKLLDIVINSLYTERDVFVRELISNSADALEKMRHEALTCQEVLDEDLPLEITIDLDEEAHTLTISDSGIGMTEQELVNNLGVIAHSGSGSFYAELA 110          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_COLP3 (Chaperone protein htpG OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=htpG PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.958e-22
Identity = 50/113 (44.25%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +S  ++ +  AF ++  ++L L+I++ YSNKEIFLREL+SN++DA  K+RF++L+D +  +   +L + +  DK NNTL+I D+GIGM   +++ +LGTIA+SGT EF   L+
Sbjct:    1 MSETNQVQNHAFASDNAKILQLMIHSLYSNKEIFLRELVSNAADAADKLRFKALSDNTLYENDGDLRVRVSCDKENNTLTISDNGIGMNVDEVIEHLGTIAKSGTAEFFSQLS 113          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_PELLD (Chaperone protein htpG OS=Pelodictyon luteolum (strain DSM 273) GN=htpG PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.557e-22
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            + F ++AE+ QLL LI+++ Y++ EIFLREL+SN+SDAL K RF +LTD +      E  I I  D      +I D+GIGMT+ +L+ NLGT+ARSGT  FM+AL
Sbjct:   10 QEFEYKAEMKQLLDLIVHSLYTHPEIFLRELVSNASDALSKARFSALTDDTMAKVSGEAAIRISLDAKTAAFAIEDTGIGMTEEELIANLGTVARSGTLGFMQAL 114          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_ALISL (Chaperone protein htpG OS=Aliivibrio salmonicida (strain LFI1238) GN=htpG PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.557e-22
Identity = 53/106 (50.00%), Postives = 77/106 (72.64%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA  K+RF++L++    +   +L + I  +   NTL+I D+GIGM + D++ +LGTIA+SGT +F   L+
Sbjct:   10 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDASDKLRFKALSNGDLYEGNADLGVKISFNVEANTLTISDNGIGMGREDVIEHLGTIAKSGTADFFSKLS 115          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_STRCO (Chaperone protein htpG OS=Streptomyces coelicolor GN=htpG PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.339e-22
Identity = 57/116 (49.14%), Postives = 78/116 (67.24%), Query Frame = 3
Query:  129 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL-----AAGAD 461
            TETF FQ E  QLL L+I++ YSNK++FLREL+SN+SDAL K+R  +L D +      +L I +  DK   TL++ D+GIGM+  ++   +GTIA SGT +F+E L     AAGAD
Sbjct:    3 TETFEFQVEARQLLQLMIHSVYSNKDVFLRELVSNASDALDKLRLAALRDDAPDADVSDLHIELEVDKDARTLTVRDNGIGMSYDEVTRLIGTIANSGTAKFLEELREAKDAAGAD 118          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_RHILO (Chaperone protein htpG OS=Rhizobium loti GN=htpG PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.339e-22
Identity = 49/111 (44.14%), Postives = 81/111 (72.97%), Query Frame = 3
Query:  129 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGAD 461
            TET AF+A++++LL +++++ YS+K++FLRELISN++DA  K+RFE+++    L   P+  I I  D  N  +++ D+GIGM++ D+   LGTIARSGT+ F+E + +G +
Sbjct:    8 TETRAFEADVSRLLHMMVHSVYSDKDVFLRELISNAADACEKLRFEAVSRPELLGDDPKPRISISADPDNKEITVEDNGIGMSRDDMAEALGTIARSGTRAFIERVGSGTE 118          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_NOCFA (Chaperone protein htpG OS=Nocardia farcinica GN=htpG PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.339e-22
Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            M    E   FQAE +QLL L+I++ YSNK+ FLRELISN+SDAL K+R ES  DK       +L I +  DK N  L++ D+GIGM++A++V+ +GT+A+SGT E    L+
Sbjct:    1 MTEHVEQLEFQAETHQLLELMIHSVYSNKDTFLRELISNASDALDKLRLESFKDKDLHVDTADLHIELEVDKDNRILTVRDNGIGMSRAEVVDLIGTLAKSGTAELRRKLS 111          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_SALTO (Chaperone protein htpG OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.361e-22
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 3
Query:  129 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGAD 461
            +ET  FQAE  QLL L++++ YSNK++FLRELISN+SDAL K+R  SL DK       +L I I  D    TL++ D+GIGM++ ++V  +GTIA+SGT E +  L   AD
Sbjct:    3 SETLEFQAEARQLLQLMVHSIYSNKDVFLRELISNASDALDKLRLASLRDKDLDVDTADLHIAIEIDPDARTLTVRDNGIGMSRDEVVQVIGTIAKSGTAELLRTLRESAD 113          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_ORITB (Chaperone protein htpG OS=Orientia tsutsugamushi (strain Boryong) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.696e-22
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 458
            ET+ F AE+ ++L L+I+T Y+NK+IFLRELISN+SDA  K+R+ S ++   L  + +  I +  DK    + + D+GIGM K DL  NLGTIA SGT++F+E L   A
Sbjct:    4 ETYKFDAEVGKVLHLVIHTLYTNKKIFLRELISNASDACDKLRYLSQSNAELLQGESDFKITVSMDKEKRYIILQDNGIGMNKEDLTQNLGTIASSGTQKFLEQLGNDA 112          
The following BLAST results are available for this feature:
BLAST of FC876383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_PROVI1.958e-2251.43Chaperone protein htpG OS=Prosthecochloris vibriof... [more]
HTPG_DESPS1.958e-2250.46Chaperone protein htpG OS=Desulfotalea psychrophil... [more]
HTPG_COLP31.958e-2244.25Chaperone protein htpG OS=Colwellia psychrerythrae... [more]
HTPG_PELLD2.557e-2250.48Chaperone protein htpG OS=Pelodictyon luteolum (st... [more]
HTPG_ALISL2.557e-2250.00Chaperone protein htpG OS=Aliivibrio salmonicida (... [more]
HTPG_STRCO3.339e-2249.14Chaperone protein htpG OS=Streptomyces coelicolor ... [more]
HTPG_RHILO3.339e-2244.14Chaperone protein htpG OS=Rhizobium loti GN=htpG P... [more]
HTPG_NOCFA3.339e-2248.65Chaperone protein htpG OS=Nocardia farcinica GN=ht... [more]
HTPG_SALTO4.361e-2249.55Chaperone protein htpG OS=Salinispora tropica (str... [more]
HTPG_ORITB5.696e-2247.71Chaperone protein htpG OS=Orientia tsutsugamushi (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004B04EF DevOvary1 Citrus clementina cDNA clone C32004B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876383 ID=FC876383; Name=FC876383; organism=Citrus clementina; type=EST; length=467bp
GGAAACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTT
CGCTTCCAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGG
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
back to top