FC876383

Overview
NameFC876383
Unique NameFC876383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876383_ssr24 microsatellite FC876383_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:1..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_BORAP (Chaperone protein htpG OS=Borrelia afzelii (strain PKo) GN=htpG PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.513e-19
Identity = 52/101 (51.49%), Postives = 72/101 (71.29%), Query Frame = 3
Query:  144 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            F  E+N LL LII++ YS+KEIFLRELISN+SDA+ K++F SLT++   +   E  I I  D  + ++ I D+GIGM + +L N+LG IA+SGTKEF+  L
Sbjct:    5 FDTEVNDLLYLIIHSLYSHKEIFLRELISNASDAIDKLKFLSLTNEKFKNIALEPKIEITFD--DKSILIKDNGIGMNEQELTNHLGVIAKSGTKEFINNL 103          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_NITWN (Chaperone protein htpG OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=htpG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.894e-19
Identity = 46/107 (42.99%), Postives = 76/107 (71.03%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 452
            E+  F+A++ +LL +++++ YS+K++FLRELISN++DA  ++R+E+++D + L  +    I I  D     L++ D+GIGM + +LV+ LGTIARSGTK F+E   A
Sbjct:   12 ESRVFEADVAKLLQMMVHSVYSDKDVFLRELISNAADACERLRYEAISDPALLTDETRPRISITIDAERRQLAVEDNGIGMGRDELVDALGTIARSGTKAFIEQAEA 118          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_EXIS2 (Chaperone protein htpG OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=htpG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.894e-19
Identity = 50/101 (49.50%), Postives = 72/101 (71.29%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEF 434
            ET  F+AE  +LL ++I++ Y++KEIFLRELISN+SDA+ KI +++LTD++    +    I I P+K    L + D+GIGMTK +L  NLGTIA+SG+  F
Sbjct:    2 ETKQFKAESKRLLEMMIHSIYTHKEIFLRELISNASDAMDKIYYKALTDETITFDKDAYKITIEPNKETRQLILRDTGIGMTKDELEENLGTIAKSGSLAF 102          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_RHIEC (Chaperone protein htpG OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=htpG PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.698e-19
Identity = 46/106 (43.40%), Postives = 74/106 (69.81%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            E+  F+A++ +LL +++++ YS+K +FLRELISN +DA  K+R+E++   S L A  E  I +  D+ +  L + D+GIGM + +++  LGTIARSGT+ FME +A
Sbjct:   10 ESHVFEADVARLLHMMVHSVYSDKGVFLRELISNGADACEKLRYEAIETPSLLAADAESRIMLRLDEESRQLVVEDNGIGMRRDEMIEALGTIARSGTRAFMERIA 115          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HS904_HUMAN (Putative heat shock protein HSP 90-alpha A4 OS=Homo sapiens GN=HSP90AA4P PE=5 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.925e-18
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 3
Query:  264 ESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            ESLTD SKLD+  E  I +IP+K + TL+I+D+GIGMTKADL+NNLGTI +S TK FME L AGAD+S
Sbjct:    2 ESLTDPSKLDSGKEPHISLIPNKQDRTLTIVDTGIGMTKADLINNLGTITKSETKVFMEVLQAGADIS 69          
The following BLAST results are available for this feature:
BLAST of FC876383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_BORAP4.513e-1951.49Chaperone protein htpG OS=Borrelia afzelii (strain... [more]
HTPG_NITWN5.894e-1942.99Chaperone protein htpG OS=Nitrobacter winogradskyi... [more]
HTPG_EXIS25.894e-1949.50Chaperone protein htpG OS=Exiguobacterium sibiricu... [more]
HTPG_RHIEC7.698e-1943.40Chaperone protein htpG OS=Rhizobium etli (strain C... [more]
HS904_HUMAN2.925e-1866.18Putative heat shock protein HSP 90-alpha A4 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionC32004B04EF DevOvary1 Citrus clementina cDNA clone C32004B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876383 ID=FC876383; Name=FC876383; organism=Citrus clementina; type=EST; length=467bp
GGAAACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTT
CGCTTCCAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGG
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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