FC876383

Overview
NameFC876383
Unique NameFC876383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876383_ssr24 microsatellite FC876383_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:1..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP90_SCHPO (Heat shock protein 90 homolog OS=Schizosaccharomyces pombe GN=swo1 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 1.594e-40
Identity = 83/115 (72.17%), Postives = 98/115 (85.22%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            S TETF F+AEI+QL+SLIINT YSNKEIFLRELISN+SDAL KIR++SL+D   LDA+ +LFI I PDK N  LSI D+GIGMTK DL+NNLG IA+SGTK+FMEA A+GAD+S
Sbjct:    2 SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAASGADIS 116          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP90_CANAL (Heat shock protein 90 homolog OS=Candida albicans GN=HSP90 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.594e-40
Identity = 84/115 (73.04%), Postives = 99/115 (86.09%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            ++ ET  F AEI+QL+SLIINT YSNKEIFLRELISN+SDAL KIR+++L+D S+L+++PELFI IIP K    L I DSGIGMTKADLVNNLGTIA+SGTK FMEAL+AGADVS
Sbjct:    4 AKVETHEFTAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQALSDPSQLESEPELFIRIIPQKDQKVLEIRDSGIGMTKADLVNNLGTIAKSGTKSFMEALSAGADVS 118          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSC90_DICDI (Heat shock cognate 90 kDa protein OS=Dictyostelium discoideum GN=hspD PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 3.551e-40
Identity = 85/116 (73.28%), Postives = 99/116 (85.34%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAG-ADVS 467
            S+ E F FQAEINQL+SLIINTFYSNKE+FLRELISN+SDAL KIR++SLTD S L+++ EL I IIPDKT  TL++IDSGIGMTK D+V NLGTIARSGTK FME L +G AD+S
Sbjct:    4 SQVERFTFQAEINQLMSLIINTFYSNKEVFLRELISNASDALDKIRYQSLTDASVLESKTELEIKIIPDKTAKTLTLIDSGIGMTKTDMVKNLGTIARSGTKNFMEQLQSGAADIS 119          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP82_YEAST (ATP-dependent molecular chaperone HSP82 OS=Saccharomyces cerevisiae GN=HSP82 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.128e-39
Identity = 81/113 (71.68%), Postives = 95/113 (84.07%), Query Frame = 3
Query:  129 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            +ETF FQAEI QL+SLIINT YSNKEIFLRELISN+SDAL KIR++SL+D  +L+ +P+LFI I P      L I DSGIGMTKA+L+NNLGTIA+SGTK FMEAL+AGADVS
Sbjct:    3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVS 115          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP90_THEAN (Heat shock protein 90 OS=Theileria annulata GN=TA12105 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 8.746e-39
Identity = 82/122 (67.21%), Postives = 101/122 (82.79%), Query Frame = 3
Query:  117 MASETET-----FAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            MAS+ ET     +AF A+I+QLLSLIIN FYSNKEIFLRELISN+SDAL KIR+E++ D  +++ QP+ +I +  DK NNTL+I DSGIGMTKADLVNNLGTIA+SGT+ FMEAL AG+D+S
Sbjct:    1 MASKEETPDQEVYAFNADISQLLSLIINAFYSNKEIFLRELISNASDALEKIRYEAIKDPKQIEDQPDYYIRLYADKNNNTLTIEDSGIGMTKADLVNNLGTIAKSGTRAFMEALQAGSDMS 122          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP90_THEPA (Heat shock protein 90 OS=Theileria parva GN=TP02_0244 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.142e-38
Identity = 78/114 (68.42%), Postives = 97/114 (85.09%), Query Frame = 3
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            + E +AF A+I+QLLSLIIN FYSNKEIFLRELISN+SDAL KIR+E++ D  +++ QP+ +I +  DK NNTL+I DSGIGMTKADLVNNLGTIA+SGT+ FMEAL AG+D+S
Sbjct:    9 DQEVYAFNADISQLLSLIINAFYSNKEIFLRELISNASDALEKIRYEAIKDPKQIEDQPDYYIRLYADKNNNTLTIEDSGIGMTKADLVNNLGTIAKSGTRAFMEALQAGSDMS 122          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP82_ASHGO (Heat shock protein HSP82 OS=Ashbya gossypii GN=HSP82 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.142e-38
Identity = 81/115 (70.43%), Postives = 94/115 (81.74%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            S  ET+ FQAEI QL+SLIINT YSNKEIFLRELISN+SDAL KIR++SL+D   L++ PELFI + P      L I DSGIGMTKA+L+NNLGTIA+SGTK FMEAL+AGADVS
Sbjct:    2 SSQETYEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPKVLESDPELFIRLTPKPEEKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVS 116          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSC82_YEAST (ATP-dependent molecular chaperone HSC82 OS=Saccharomyces cerevisiae GN=HSC82 PE=1 SV=4)

HSP 1 Score: 158.688 bits (400), Expect = 1.142e-38
Identity = 80/112 (71.43%), Postives = 94/112 (83.93%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            ETF FQAEI QL+SLIINT YSNKEIFLRELISN+SDAL KIR+++L+D  +L+ +P+LFI I P      L I DSGIGMTKA+L+NNLGTIA+SGTK FMEAL+AGADVS
Sbjct:    4 ETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQALSDPKQLETEPDLFIRITPKPEEKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVS 115          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HSP83_DROPB (Heat shock protein 83 (Fragment) OS=Drosophila pseudoobscura bogotana GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.492e-38
Identity = 84/117 (71.79%), Postives = 93/117 (79.49%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            M  E ETFAFQAEI QL+SLIINTFYSNKEIFLRELISN+SDAL KIR+ S TD  KL          IP+KT  TL+IID+GI MTK+DLVNNLGTIA+SGTK FMEAL AGAD+S
Sbjct:    1 MPEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYXSXTDPXKLXXXXXXXXXXIPNKTAGTLTIIDTGIXMTKSDLVNNLGTIAKSGTKAFMEALQAGADIS 117          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: H90B3_HUMAN (Putative heat shock protein HSP 90-beta-3 OS=Homo sapiens GN=HSP90AB3P PE=5 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 3.675e-37
Identity = 80/109 (73.39%), Postives = 93/109 (85.32%), Query Frame = 3
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 452
            E ETFAFQAEI QL+SLIINTFYSN+EIFL+ELISN+SDAL KIR+ESLTD SKLD+  EL I IIP+    TL+++D+GIGMTKADL+NNL TIA+SGTK  MEAL A
Sbjct:   11 EVETFAFQAEIAQLISLIINTFYSNEEIFLQELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLALVDTGIGMTKADLINNLRTIAKSGTKACMEALQA 119          
The following BLAST results are available for this feature:
BLAST of FC876383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HSP90_SCHPO1.594e-4072.17Heat shock protein 90 homolog OS=Schizosaccharomyc... [more]
HSP90_CANAL1.594e-4073.04Heat shock protein 90 homolog OS=Candida albicans ... [more]
HSC90_DICDI3.551e-4073.28Heat shock cognate 90 kDa protein OS=Dictyostelium... [more]
HSP82_YEAST5.128e-3971.68ATP-dependent molecular chaperone HSP82 OS=Sacchar... [more]
HSP90_THEAN8.746e-3967.21Heat shock protein 90 OS=Theileria annulata GN=TA1... [more]
HSP90_THEPA1.142e-3868.42Heat shock protein 90 OS=Theileria parva GN=TP02_0... [more]
HSP82_ASHGO1.142e-3870.43Heat shock protein HSP82 OS=Ashbya gossypii GN=HSP... [more]
HSC82_YEAST1.142e-3871.43ATP-dependent molecular chaperone HSC82 OS=Sacchar... [more]
HSP83_DROPB1.492e-3871.79Heat shock protein 83 (Fragment) OS=Drosophila pse... [more]
H90B3_HUMAN3.675e-3773.39Putative heat shock protein HSP 90-beta-3 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionC32004B04EF DevOvary1 Citrus clementina cDNA clone C32004B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876383 ID=FC876383; Name=FC876383; organism=Citrus clementina; type=EST; length=467bp
GGAAACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTT
CGCTTCCAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGG
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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