FC876383

Overview
NameFC876383
Unique NameFC876383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876383_ssr24 microsatellite FC876383_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:1..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: H90B2_HUMAN (Putative heat shock protein HSP 90-beta 2 OS=Homo sapiens GN=HSP90AB2P PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 6.486e-34
Identity = 75/108 (69.44%), Postives = 90/108 (83.33%), Query Frame = 3 
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIAR-SGTKEFMEAL 446
            E ETFAFQAEI QL+SLIINTFYSNKEIFL ELISN+SDAL KIR+ESLTD SKLD+  EL I IIP+   +TL+++D+GIGMTKADL+NNLGTIA+     E++E +
Sbjct:   11 EVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNTQEHTLTLVDTGIGMTKADLINNLGTIAKFQDQTEYLEEM 118
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_MYXXD (Chaperone protein htpG OS=Myxococcus xanthus (strain DK 1622) GN=htpG PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.352e-31
Identity = 68/113 (60.18%), Postives = 89/113 (78.76%), Query Frame = 3 
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            V  A + ET AFQAEINQLLSL+IN+ YS+KEIFLREL+SN+SDAL K+RF ++T+   L  +P L + +IPD+   TL+I D+GIGM+  +LV NLGTIA SG++EF+EALA
Sbjct:    3 VENAPQRETHAFQAEINQLLSLVINSLYSHKEIFLRELVSNASDALDKLRFRAITEPELLADEPALELRLIPDEAKGTLTIEDTGIGMSHDELVKNLGTIAHSGSREFIEALA 115
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: H90B4_HUMAN (Putative heat shock protein HSP 90-beta 4 OS=Homo sapiens GN=HSP90AB4P PE=5 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.495e-30
Identity = 67/100 (67.00%), Postives = 83/100 (83.00%), Query Frame = 3 
Query:  168 LSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            +SLIINTFYSNKEIFL+ELISN+SDAL KIR+ESLTD SKLD   EL I IIP+     L+++++GIGMTKADL+NNLG IA+SGT+ FMEA  + A++S
Sbjct:    1 MSLIINTFYSNKEIFLQELISNASDALDKIRYESLTDPSKLDGGKELKIDIIPNPRECILTLVNTGIGMTKADLINNLGAIAKSGTEAFMEAFQSCAEIS 100
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: ENPL_CHICK (Endoplasmin OS=Gallus gallus GN=HSP90B1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.682e-30
Identity = 66/121 (54.55%), Postives = 86/121 (71.07%), Query Frame = 3 
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDAL KIR  SLTD++ L    EL + I  DK  N L + D+GIGMTK +L+ NLGTIA+SGT EF+  +    D S
Sbjct:   64 QIKEIREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNMLHVTDTGIGMTKEELIKNLGTIAKSGTSEFLNKMTEMQDDS 184
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: ENPL_PIG (Endoplasmin OS=Sus scrofa GN=HSP90B1 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 7.421e-30
Identity = 64/115 (55.65%), Postives = 85/115 (73.91%), Query Frame = 3 
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDAL KIR  SLTD++ L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +A
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMA 179
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: ENPL_PONAB (Endoplasmin OS=Pongo abelii GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.266e-29
Identity = 63/114 (55.26%), Postives = 84/114 (73.68%), Query Frame = 3 
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDAL KIR  SLTD++ L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALSGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: ENPL_MACFA (Endoplasmin OS=Macaca fascicularis GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.266e-29
Identity = 63/114 (55.26%), Postives = 84/114 (73.68%), Query Frame = 3 
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDAL KIR  SLTD++ L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALSGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: ENPL_HUMAN (Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.266e-29
Identity = 63/114 (55.26%), Postives = 84/114 (73.68%), Query Frame = 3 
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDAL KIR  SLTD++ L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALSGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: ENPL_MOUSE (Endoplasmin OS=Mus musculus GN=Hsp90b1 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 2.159e-29
Identity = 63/114 (55.26%), Postives = 84/114 (73.68%), Query Frame = 3 
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDAL KIR  SLTD++ L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178
[Close]
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: ENPL_CANFA (Endoplasmin OS=Canis familiaris GN=HSP90B1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.159e-29
Identity = 63/114 (55.26%), Postives = 84/114 (73.68%), Query Frame = 3 
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDAL KIR  SLTD++ L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178
The following BLAST results are available for this feature:
BLAST of FC876383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
H90B2_HUMAN6.486e-3469.44Putative heat shock protein HSP 90-beta 2 OS=Homo ... [more]
HTPG_MYXXD1.352e-3160.18Chaperone protein htpG OS=Myxococcus xanthus (stra... [more]
H90B4_HUMAN1.495e-3067.00Putative heat shock protein HSP 90-beta 4 OS=Homo ... [more]
ENPL_CHICK5.682e-3054.55Endoplasmin OS=Gallus gallus GN=HSP90B1 PE=1 SV=1[more]
ENPL_PIG7.421e-3055.65Endoplasmin OS=Sus scrofa GN=HSP90B1 PE=2 SV=3[more]
ENPL_PONAB1.266e-2955.26Endoplasmin OS=Pongo abelii GN=HSP90B1 PE=2 SV=1[more]
ENPL_MACFA1.266e-2955.26Endoplasmin OS=Macaca fascicularis GN=HSP90B1 PE=2... [more]
ENPL_HUMAN1.266e-2955.26Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1[more]
ENPL_MOUSE2.159e-2955.26Endoplasmin OS=Mus musculus GN=Hsp90b1 PE=1 SV=2[more]
ENPL_CANFA2.159e-2955.26Endoplasmin OS=Canis familiaris GN=HSP90B1 PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32004B04EF DevOvary1 Citrus clementina cDNA clone C32004B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876383 ID=FC876383; Name=FC876383; organism=Citrus clementina; type=EST; length=467bp
GGAAACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTT
CGCTTCCAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGG
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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