FC876383

Overview
NameFC876383
Unique NameFC876383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876383_ssr24 microsatellite FC876383_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:1..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: ENPL_BOVIN (Endoplasmin OS=Bos taurus GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.159e-29
Identity = 63/114 (55.26%), Postives = 84/114 (73.68%), Query Frame = 3
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDAL KIR  SLTD++ L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: ENPL_RAT (Endoplasmin OS=Rattus norvegicus GN=Hsp90b1 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 4.810e-29
Identity = 62/114 (54.39%), Postives = 84/114 (73.68%), Query Frame = 3
Query:  105 QVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            Q+  +  ++E FAFQAE+N+++ LIIN+ Y NKEIFLRELISN+SDAL KIR  SLTD++ L    EL + I  D+  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:   65 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDREKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 178          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_THICR (Chaperone protein htpG OS=Thiomicrospira crunogena (strain XCL-2) GN=htpG PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.205e-29
Identity = 62/106 (58.49%), Postives = 84/106 (79.25%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 440
            S TET AFQ E+NQLL L+I+  YSNKEIFLREL+SN+SDAL K+RFES+++ +  + + EL I +  DK   T+SIID+GIGMT+ +++ N+GTIA SGTK+F+E
Sbjct:    2 SHTETHAFQTEVNQLLKLMIHALYSNKEIFLRELVSNASDALDKLRFESVSNDALSEGESELAIQVGFDKEARTVSIIDNGIGMTRDEVIANIGTIANSGTKKFLE 107          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: ENPL_HORVU (Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.205e-29
Identity = 70/135 (51.85%), Postives = 94/135 (69.63%), Query Frame = 3
Query:   84 DRFLVERQVVSMASET-----ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDA--QPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            D  +V+R+  S++ +T     E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDAL KIRF +LTDK  +      +L I I  DK N  LSI D G+GMTK DL+ NLGTIA+SGT  F+E +  G D++
Sbjct:   57 DSEVVQRESESISRKTLRNSAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKEVMGEGDTAKLEIQIKLDKENKILSIRDRGVGMTKEDLIKNLGTIAKSGTSAFVEKMQTGGDLN 191          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_NITEU (Chaperone protein htpG OS=Nitrosomonas europaea GN=htpG PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.400e-28
Identity = 61/109 (55.96%), Postives = 84/109 (77.06%), Query Frame = 3
Query:  120 ASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            A   E   FQAE NQLL L+I++ YSNKEIFLRELISN+SDA  K+RFE L+D +  ++ P+L I I  DK   T++IID+GIGM++ +++NN+GTIA+SGT+EF ++L
Sbjct:    4 AENIEHLNFQAEANQLLKLMIHSLYSNKEIFLRELISNASDAADKLRFEGLSDAALYESDPDLKIRIAYDKEARTITIIDNGIGMSRQEVINNIGTIAKSGTREFFDSL 112          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: ENPL_DICDI (Endoplasmin homolog OS=Dictyostelium discoideum GN=grp94 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.400e-28
Identity = 68/125 (54.40%), Postives = 88/125 (70.40%), Query Frame = 3
Query:   99 ERQVVSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKL--DAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            E +   +  + E F FQ E+N+L+++IIN+ YS KEIFLRELISN+SDAL KIRF +LT+   L    Q  L IHI  DK NN L I D G+GMTK +LV NLGTIA+SGTKEF++ ++  A+ S
Sbjct:   39 EAEAKLIEEKGEKFTFQTEVNKLMNIIINSLYSKKEIFLRELISNASDALDKIRFLALTNADLLGEGEQSNLDIHIKIDKANNVLHITDRGVGMTKDELVRNLGTIAQSGTKEFIKKVSDSAESS 163          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: ENPL_ARATH (Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.387e-28
Identity = 71/135 (52.59%), Postives = 92/135 (68.15%), Query Frame = 3
Query:   84 DRFLVERQVVSMASET-----ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDA--QPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            D  +V R+  SM+ +T     E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDAL KIRF +LTDK  L      +L I I  DK    LSI D GIGMTK DL+ NLGTIA+SGT  F+E + +  D++
Sbjct:   56 DSDVVHRESESMSKKTLRSNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKDVLGEGDTAKLEIQIKLDKAKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQSSGDLN 190          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_HALHL (Chaperone protein htpG OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=htpG PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.072e-28
Identity = 59/112 (52.68%), Postives = 86/112 (76.79%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            +S  +++ET  FQAE+ QLLSL+I++ YSN+E+FLRELISN+SDA+ K+RFE+L  +S  +  PEL I +  D    T+++ID+GIGM++ D++ NLGTIA SGT+ F+E L
Sbjct:    1 MSADTQSETLEFQAEVQQLLSLMIHSVYSNREVFLRELISNASDAIDKLRFEALQQESLYEDDPELKIRVEADPEARTVTVIDNGIGMSREDVIENLGTIAHSGTRRFLEQL 112          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: ENPL_CATRO (Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.946e-28
Identity = 70/135 (51.85%), Postives = 91/135 (67.41%), Query Frame = 3
Query:   84 DRFLVERQVVSMA-----SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDA--QPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVS 467
            D  + +R+  SM+     S+ E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDAL KIRF +LTDK  L      +L I I  DK    LSI D GIGMTK DL+ NLGTIA+SGT  F+E +    D++
Sbjct:   57 DSDVAKREAESMSMRNLRSDAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLALTDKEILGEGDTAKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLN 191          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_ALHEH (Chaperone protein htpG OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.185e-27
Identity = 59/105 (56.19%), Postives = 82/105 (78.10%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            ET  FQAE+ QLL L+I++ YSNK+IFLRELISN+SDA+ K+RF+SL D+S L+ + +L I +  DK   T+++ D+GIGMT+ ++  NLGTIARSGTK F++ L
Sbjct:    8 ETLEFQAEVQQLLHLMIHSLYSNKDIFLRELISNASDAIDKLRFQSLQDESLLEGEGDLRIRVSVDKDARTITVADNGIGMTRDEVAENLGTIARSGTKAFLDQL 112          
The following BLAST results are available for this feature:
BLAST of FC876383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
ENPL_BOVIN2.159e-2955.26Endoplasmin OS=Bos taurus GN=HSP90B1 PE=2 SV=1[more]
ENPL_RAT4.810e-2954.39Endoplasmin OS=Rattus norvegicus GN=Hsp90b1 PE=1 S... [more]
HTPG_THICR8.205e-2958.49Chaperone protein htpG OS=Thiomicrospira crunogena... [more]
ENPL_HORVU8.205e-2951.85Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1[more]
HTPG_NITEU1.400e-2855.96Chaperone protein htpG OS=Nitrosomonas europaea GN... [more]
ENPL_DICDI1.400e-2854.40Endoplasmin homolog OS=Dictyostelium discoideum GN... [more]
ENPL_ARATH2.387e-2852.59Endoplasmin homolog OS=Arabidopsis thaliana GN=SHD... [more]
HTPG_HALHL4.072e-2852.68Chaperone protein htpG OS=Halorhodospira halophila... [more]
ENPL_CATRO6.946e-2851.85Endoplasmin homolog OS=Catharanthus roseus GN=HSP9... [more]
HTPG_ALHEH1.185e-2756.19Chaperone protein htpG OS=Alkalilimnicola ehrliche... [more]

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Properties
Property NameValue
Genbank descriptionC32004B04EF DevOvary1 Citrus clementina cDNA clone C32004B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876383 ID=FC876383; Name=FC876383; organism=Citrus clementina; type=EST; length=467bp
GGAAACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTT
CGCTTCCAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGG
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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