FC876383

Overview
NameFC876383
Unique NameFC876383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876383_ssr24 microsatellite FC876383_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:1..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_PELPD (Chaperone protein htpG OS=Pelobacter propionicus (strain DSM 2379) GN=htpG PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.021e-27
Identity = 60/104 (57.69%), Postives = 81/104 (77.88%), Query Frame = 3
Query:  135 TFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            T  FQ E+ QLL L+I++ YSN++IFLRELISNSSDA+ KIRFE+ +++  L+   +  I +IPDK   TL+I+D+GIGMT A++  N+GTIARSGTK FM+AL
Sbjct:    5 TKQFQTEVKQLLDLVIHSLYSNRDIFLRELISNSSDAIDKIRFEAHSNEELLEGNSDWKIKLIPDKDAGTLTILDNGIGMTMAEVEENIGTIARSGTKAFMQAL 108          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_THIDA (Chaperone protein htpG OS=Thiobacillus denitrificans (strain ATCC 25259) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.640e-27
Identity = 59/113 (52.21%), Postives = 85/113 (75.22%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +S  S  ET  FQAE+ QLL L+I++ YSNK+IFLRELISN+SDA  K+RFE+L+D +  +  PEL I I  D+   TL+I D+GIGM++ ++++++GTIA+SGT+EF   L+
Sbjct:    1 MSATSSKETLGFQAEVKQLLQLMIHSLYSNKDIFLRELISNASDAADKLRFEALSDAALFENDPELKIRIAFDRDARTLTISDNGIGMSRQEVIDHIGTIAKSGTREFFSQLS 113          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_MAGSM (Chaperone protein htpG OS=Magnetococcus sp. (strain MC-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.640e-27
Identity = 61/112 (54.46%), Postives = 84/112 (75.00%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            +S A+ETE   FQ E++QLL L+I+  YSNKEIFLRELISN+SDA  K+RF  L+D S  +   EL I +  DK   T SI+D+GIGM++ ++++N+GTIA+SGTKEF ++L
Sbjct:    1 MSAATETEVREFQTEVSQLLDLMIHALYSNKEIFLRELISNASDANDKLRFAGLSDDSLFEGDSELTIKLEFDKEAGTFSIMDNGIGMSRDEVISNIGTIAKSGTKEFFKSL 112          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_RUTMC (Chaperone protein htpG OS=Ruthia magnifica subsp. Calyptogena magnifica GN=htpG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.447e-27
Identity = 57/108 (52.78%), Postives = 87/108 (80.56%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            +E +   FQ E++QLL L+I++ YSNKEIFLREL+SNSSDA+ K++F+SL+D + ++ + EL IHI  +K  +T++I D+GIGMT+A++  N+GTIA SGTK+F+++L
Sbjct:    2 AEKQIHTFQTEVSQLLDLMIHSLYSNKEIFLRELVSNSSDAVDKLKFKSLSDDTLIEGKEELQIHINTNKDASTITITDNGIGMTEAEVNKNIGTIANSGTKKFLKSL 109          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_RALEJ (Chaperone protein htpG OS=Ralstonia eutropha (strain JMP134) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.502e-27
Identity = 60/111 (54.05%), Postives = 82/111 (73.87%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            M++  ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA  K+RFE++ + S L+   +L I I  D    TL I D+GIGM++ + + NLGTIARSGTKEF + L+
Sbjct:    1 MSAPHETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLLENDADLAIRIEADTAARTLKITDNGIGMSRDEAIRNLGTIARSGTKEFFQQLS 111          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_RALEH (Chaperone protein htpG OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.502e-27
Identity = 60/111 (54.05%), Postives = 83/111 (74.77%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            M +  ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA  K+RFE++ + S L+   +L I I  D    TL+I D+GIGM++ + ++NLGTIARSGTKEF + L+
Sbjct:    1 MTAPHETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLLENDADLAIRIEADAKARTLTITDNGIGMSRDEAIHNLGTIARSGTKEFFQQLS 111          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_NITOC (Chaperone protein htpG OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.502e-27
Identity = 59/113 (52.21%), Postives = 83/113 (73.45%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +++AS  ET  FQ E+ QLL+L+I+  YSNKEIFLRELISN +DA  K+RFE+LTD +  +    L I +  DK   TL+I D+GIGM + ++V N+GTIA+SGT+ F+E+L+
Sbjct:    1 MTVASHKETLGFQTEVKQLLNLMIHALYSNKEIFLRELISNGADAADKLRFEALTDDALYEDDSALHIRLSYDKDKRTLTIADNGIGMGRQEVVENIGTIAKSGTRAFLESLS 113          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_METFK (Chaperone protein htpG OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=htpG1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.880e-27
Identity = 61/113 (53.98%), Postives = 85/113 (75.22%), Query Frame = 3
Query:  117 MASET---ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            M++ET   ET  FQAE+ QLL L+I++ YSNKEI LRELISN+SDA  K+RFE+L D S      +L I +  DK   T++I D+GIGM++ +++NN+GTIA+SGTKEF+++L
Sbjct:    1 MSTETLQKETLGFQAEVKQLLQLMIHSLYSNKEIVLRELISNASDAADKLRFEALADNSLYGNDSDLKIRVSFDKQARTITISDNGIGMSREEVINNIGTIAKSGTKEFLQSL 113          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_CUPTR (Chaperone protein htpG OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.680e-27
Identity = 60/111 (54.05%), Postives = 81/111 (72.97%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            M +  ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA  K+RFE++ + S L+   +L I I  D    TL I D+GIGM++ + + NLGTIARSGTKEF + L+
Sbjct:    1 MTAPHETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLLENDADLAIRIEADAKARTLKITDNGIGMSRDEAIRNLGTIARSGTKEFFQQLS 111          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_BAUCH (Chaperone protein htpG OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=htpG PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.680e-27
Identity = 57/107 (53.27%), Postives = 81/107 (75.70%), Query Frame = 3
Query:  126 ETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            E ET  FQ+E+ QLL+L+I++ YSNKEIFLRELISN+SDA  K+RF +L      +   EL++ II +K   T++IID+GIGM + ++++NLGTIA+SGTK F+E +
Sbjct:    5 EQETLGFQSEVKQLLNLMIHSLYSNKEIFLRELISNASDAADKLRFLALAKPDLYEGNGELYVRIICNKEKRTITIIDNGIGMCRTEVIDNLGTIAKSGTKAFLETI 111          
The following BLAST results are available for this feature:
BLAST of FC876383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_PELPD2.021e-2757.69Chaperone protein htpG OS=Pelobacter propionicus (... [more]
HTPG_THIDA2.640e-2752.21Chaperone protein htpG OS=Thiobacillus denitrifica... [more]
HTPG_MAGSM2.640e-2754.46Chaperone protein htpG OS=Magnetococcus sp. (strai... [more]
HTPG_RUTMC3.447e-2752.78Chaperone protein htpG OS=Ruthia magnifica subsp. ... [more]
HTPG_RALEJ4.502e-2754.05Chaperone protein htpG OS=Ralstonia eutropha (stra... [more]
HTPG_RALEH4.502e-2754.05Chaperone protein htpG OS=Ralstonia eutropha (stra... [more]
HTPG_NITOC4.502e-2752.21Chaperone protein htpG OS=Nitrosococcus oceani (st... [more]
HTPG_METFK5.880e-2753.98Chaperone protein htpG OS=Methylobacillus flagella... [more]
HTPG_CUPTR7.680e-2754.05Chaperone protein htpG OS=Cupriavidus taiwanensis ... [more]
HTPG_BAUCH7.680e-2753.27Chaperone protein htpG OS=Baumannia cicadellinicol... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004B04EF DevOvary1 Citrus clementina cDNA clone C32004B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876383 ID=FC876383; Name=FC876383; organism=Citrus clementina; type=EST; length=467bp
GGAAACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTT
CGCTTCCAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGG
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
back to top