FC876386

Overview
NameFC876386
Unique NameFC876386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length256
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:66..321. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.363e-25
Identity = 56/81 (69.14%), Postives = 65/81 (80.25%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRKFE PRHG+LGF PRKRAAR    VK+FPKDD ++   LTAF+GYKAGMTH+VRD+ KP S +HKK+  EAVTIIE P
Sbjct:    2 SHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.173e-24
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRK+E PRHGSL FLPRKRAAR    VK+FPKDDP K   LTA +GYKAGMT +VRD+ +P + +HKK+  EAVTIIETP
Sbjct:    2 SHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLDRPGAKMHKKEIVEAVTIIETP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 109.383 bits (272), Expect = 5.821e-24
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRK+E PRHG LGFLPRKRAA     VKAFPKDD SK   LT+FLGYKAGMT IVRD+ +P S  HK++  EAVT+++TP
Sbjct:    2 SHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.821e-24
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRKF  PRHG +GF P+KR+      +KAFPKDD SK   LTAFLGYKAGMTHIVRDV KP S ++KK+  EAVTI+ETP
Sbjct:    2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVTIVETP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.297e-23
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRK+E PRHG LGFLPRKRAA     VK+FPKDD SK   LT+FLGYKAGMT IVRD+ +P S  HK++  EAVT+++TP
Sbjct:    2 SHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVTVVDTP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.297e-23
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRKF  PRHG +GF P+KR+      +KAFPKDD SK   LTAFLGYKAGMTHIVRDV KP S ++KK+  EAV+IIETP
Sbjct:    2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVSIIETP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.212e-23
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRK+E PRHG LGFLPRKRAA     VKAFPKDD SK   LT+FLGYKAGMT IVRD+ +P S  HK++  EAV++++TP
Sbjct:    2 SHRKYEAPRHGHLGFLPRKRAASIRGRVKAFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVSVVDTP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.889e-23
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRKF  PRHGS+GF P+KR+ R    VKAFPKDDP+K   LTAF+ +KAGMTHIVR+V KP S ++KK+  EAVTI E P
Sbjct:    2 SHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVDKPGSKVNKKEVVEAVTIFEAP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 2.889e-23
Identity = 51/81 (62.96%), Postives = 62/81 (76.54%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRKF  PRHGS+ F P+KR+AR    VKAFPKDD SK   LT F+GYKAGMTHIVR+  +P S ++KK+  EAVT++ETP
Sbjct:    2 SHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVVEAVTVLETP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.436e-23
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRK+E PRHGSL +LPRKRAAR    VK+FPKDD  K   LTA +GYKAGMT IVRD+ +P +  HKK+  EAVTII+TP
Sbjct:    2 SHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDLDRPGAKAHKKEVVEAVTIIDTP 82          
The following BLAST results are available for this feature:
BLAST of FC876386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3_DICDI2.363e-2569.1460S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_ASPFU1.173e-2467.9060S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_YEAST5.821e-2466.6760S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3_CAEEL5.821e-2466.6760S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_CANGA1.297e-2365.4360S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]
RL3_CAEBR1.297e-2366.6760S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3_ASHGO2.212e-2365.4360S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3_TOXCA2.889e-2364.2060S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_DROME2.889e-2362.9660S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_NEUCR6.436e-2365.4360S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC32004B08EF DevOvary1 Citrus clementina cDNA clone C32004B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876386 ID=FC876386; Name=FC876386; organism=Citrus clementina; type=EST; length=256bp
TGTCTCACAGGAAGTTTGAGCACCCGAGGCATGGCTCCCTTGGATTTCTT
CCAAGGAAGCGAGCTGCTCGTCCCACACGATAGGTGAAGGCTTTTCCCAA
GGATGACCCAAGCAAGGCTTGCAGGCTCACTGCCTTTTTGGGTTACAAGG
CTGGGATGACCCACATTGTGAGGGATGTCTAGAAACCTGTATCTTAGCTT
CACAAGAAGGACACCTGTGAGGCTGTTACCATTATTGAAACCCCGTCCAA
TGATGG
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