FC876386

Overview
NameFC876386
Unique NameFC876386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length256
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:66..321. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.436e-23
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRK+E PRHG LGFLPRKRAA     VK+FPKDD +K   LT+FLGYKAGM+ IVRD+ +P S  HK++  EAVT+++TP
Sbjct:    2 SHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDQTKPVALTSFLGYKAGMSTIVRDLDRPGSKFHKREVVEAVTVVDTP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.406e-23
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRK+E PRHGSLGFLPRKR+A     VK+FPKD  SK   LTAFLGYKAGMT +VRD+ +P S +HK++  EA T+++TP
Sbjct:    2 SHRKYEAPRHGSLGFLPRKRSANIRGRVKSFPKDVKSKPVALTAFLGYKAGMTTVVRDLDRPGSKMHKREIVEAATVVDTP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.070e-21
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRKF  PRHG LGFLP KR+ R    VK +P+DDPS+   LTAFLGYKAGMTH +R+V +P   + K++  EAVTI+ETP
Sbjct:    2 SHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 2.070e-21
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LHKKDTCEAVTIIETP 245
            SHRKF  PRHG LGFLP KR+ R    VK +P+DDPS+   LTAFLGYKAGMTH +R+V +P   + K++  EAVTI+ETP
Sbjct:    2 SHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETP 82          
BLAST of FC876386 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.719e-12
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 3
Query:    3 SHRKFEHPRHGSLGFLPRKRAARPTR*VKAFPKDDPSKACRLTAFLGYKAGMTHIVRDV*KPVS*LH-KKDTCEAVTIIETP 245
            S RKF  PRHGSL F PRKR+        AFP DD S+   LT F+ YKAGMTH+VR   +        ++  +AVT++E P
Sbjct:    2 SCRKFNAPRHGSLQFCPRKRSKTIRPAAGAFPADDRSQPVHLTGFMAYKAGMTHVVRTKTQVAKNKQLSREIMDAVTVLEAP 83          
The following BLAST results are available for this feature:
BLAST of FC876386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3_KLULA6.436e-2362.9660S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3_DEBHA8.406e-2362.9660S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3L_HUMAN2.070e-2160.4960S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3L_BOVIN2.070e-2160.4960S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_ENCCU8.719e-1246.3460S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionC32004B08EF DevOvary1 Citrus clementina cDNA clone C32004B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876386 ID=FC876386; Name=FC876386; organism=Citrus clementina; type=EST; length=256bp
TGTCTCACAGGAAGTTTGAGCACCCGAGGCATGGCTCCCTTGGATTTCTT
CCAAGGAAGCGAGCTGCTCGTCCCACACGATAGGTGAAGGCTTTTCCCAA
GGATGACCCAAGCAAGGCTTGCAGGCTCACTGCCTTTTTGGGTTACAAGG
CTGGGATGACCCACATTGTGAGGGATGTCTAGAAACCTGTATCTTAGCTT
CACAAGAAGGACACCTGTGAGGCTGTTACCATTATTGAAACCCCGTCCAA
TGATGG
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