FC876391

Overview
NameFC876391
Unique NameFC876391
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: Y4885_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 55/192 (28.65%), Postives = 90/192 (46.88%), Query Frame = 1
Query:  118 LLLIFLAXXXXXXNCCPPSERAALLAFKAAL-HEPYLGIFNSWTG---NDCCHNWYGVSCDQETH---RVADINLRGESEDPIFQRAHRTGYM-------TGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDL 651
            LL+I +             E  ALL +K+   ++      +SW     +  C +WYGV+C   +     + +  + G  ED  F       ++       +G ISP   + ++L    L+    + GEIP  +  +  L  L L+ NKL+G IP +IGRL ++  + I DN ++G IP S  NL+ L++L L
Sbjct:   31 LLIISIVLSCSFAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVACSLGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSI-NQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYL 221          

HSP 2 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 39/97 (40.21%), Postives = 58/97 (59.79%), Query Frame = 1
Query:  373 MTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNTE 663
            +TG I P +  +T+LS L L+  + ITGE+P  IS+I  +  L L GN+LSG IP  I  L  L  L+++ N  S  IPP++ NL  L +++L   +
Sbjct:  490 ITGAIPPEIWNMTQLSQLDLSSNR-ITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRND 585          
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: Y2317_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 50/161 (31.06%), Postives = 78/161 (48.45%), Query Frame = 1
Query:  172 SERAALLAFKAALHEPYLGIFNSWTGND---CCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHL 645
            S+   LL  K    +  L   ++W G D   C  NW GV+C  +    +  +L   S D           ++G +SP++  L  L  L LA +  +TG+IPR I +   L ++ L  N+  G IP +I +L +L   NI +N +SG +P  I +L +L  L
Sbjct:   35 SDGQFLLELKNRGFQDSLNRLHNWNGIDETPC--NWIGVNCSSQGSSSSSNSLVVTSLDLSSMN------LSGIVSPSIGGLVNLVYLNLA-YNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEEL 186          
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: Y3804_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 52/165 (31.52%), Postives = 85/165 (51.52%), Query Frame = 1
Query:  187 LLAFKAALHEPYLGIFNSWTGNDCCH-NWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSI-ANLSSLMHLDLRNTEFRAR 675
            L+ FK+ L++P+  +  SWT +D    +W  V C+ +T RV +++L G +             +TG I+  + KL RL  L+L++    TG I   +S+   L+ LDL  N LSG IP  +G +  L  L++  N+ SG +   +  N SSL +L L +     +
Sbjct:   40 LIVFKSDLNDPFSHL-ESWTEDDNTPCSWSYVKCNPKTSRVIELSLDGLA-------------LTGKINRGIQKLQRLKVLSLSN-NNFTGNI-NALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQ 188          
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: RLK90_ARATH (Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 55/165 (33.33%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  172 SERAALLAFKAALHEPYLGIFNSWTGNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVC-KLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNTE 663
            ++++ALL+F++A+    L +++    + C  NW GV CD    RV  + L GE+             ++G+I   +   LT+L +L+L    G+TG +P  + S   LR L L GN+ SG+IP  +  L  L  LN+A+N  SG I     NL+ L  L L N +
Sbjct:   33 ADKSALLSFRSAVGGRTL-LWDVKQTSPC--NWTGVLCDGG--RVTALRLPGET-------------LSGHIPEGIFGNLTQLRTLSLR-LNGLTGSLPLDLGSCSDLRRLYLQGNRFSGEIPEVLFSLSNLVRLNLAENEFSGEISSGFKNLTRLKTLYLENNK 178          
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: BRL2_ARATH (Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  382 YISPAVCKLTRLSSLTLAD--WKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRNTE 663
            Y  P +   TR  ++   D  +  + G+IP  I  +  L++L+L  N+LSG+IP  IG+L  L V + +DN + G IP S +NLS L+ +DL N E
Sbjct:  599 YSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNE 694          
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 52/164 (31.71%), Postives = 83/164 (50.61%), Query Frame = 1
Query:  175 ERAALLAFKAALHEPYLGIFNSWTG---NDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYMTGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDLRN 657
            E  AL   +  L +P   +  SW     N C   W+ V+C+ E + V  ++L G +E            ++G++ P +  L  L  L L     ITG IP  + ++  L  LDL  N  SG IP  +G+L +L  L + +N+++G+IP S+ N+++L  LDL N
Sbjct:   29 EGDALHTLRVTLVDPN-NVLQSWDPTLVNPC--TWFHVTCNNE-NSVIRVDL-GNAE------------LSGHLVPELGVLKNLQYLELYS-NNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTLQVLDLSN 174          
BLAST of FC876391 vs. ExPASy Swiss-Prot
Match: FLS2_ARATH (LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 53/171 (30.99%), Postives = 78/171 (45.61%), Query Frame = 1
Query:  175 ERAALLAFKAALHEPYLGIFNSWT--GNDCCHNWYGVSCDQETHRVADINLRGESEDPIFQRAHRTGYM----------TGYISPAVCKLTRLSSLTLADWKGITGEIPRCISSIPFLRILDLIGNKLSGDIPRDIGRLHRLAVLNIADNNISGAIPPSIANLSSLMHLDL 651
            E  AL +FK  +    LG+ + WT  G+    NW G++CD   H V+   L  + E  +        Y+          TG I   + KLT L+ L L      +G IP  I  +  +  LDL  N LSGD+P +I +   L ++    NN++G IP     L  L+HL +
Sbjct:   30 EIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILY-LNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPEC---LGDLVHLQM 196          
The following BLAST results are available for this feature:
BLAST of FC876391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
Y4885_ARATH2.709e-1128.65Probable LRR receptor-like serine/threonine-protei... [more]
Y2317_ARATH4.622e-1131.06Probable leucine-rich repeat receptor-like protein... [more]
Y3804_ARATH6.036e-1131.52Probably inactive leucine-rich repeat receptor-lik... [more]
RLK90_ARATH6.036e-1133.33Probable inactive receptor kinase RLK902 OS=Arabid... [more]
BRL2_ARATH6.036e-1138.54Serine/threonine-protein kinase BRI1-like 2 OS=Ara... [more]
SERK1_ARATH7.883e-1131.71Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
FLS2_ARATH7.883e-1130.99LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionC32004C02EF DevOvary1 Citrus clementina cDNA clone C32004C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876391 ID=FC876391; Name=FC876391; organism=Citrus clementina; type=EST; length=677bp
GCCATGCCCATGCTCAAAACTCAATCCACTTCACTTCCCAACGTAAACCC
AAAACTCATCGTTTCGGATCAAGCAAAAACCAACATGGGTGGCTGTGTCT
CGTTTTACACTGCACAGCTTCTTCTAATCTTCCTCGCCGTTAGTTCTTCC
GTCGTTAACTGCTGCCCGCCGTCAGAGCGGGCAGCACTCTTAGCCTTCAA
AGCTGCCCTCCACGAGCCTTACTTGGGCATCTTCAACTCCTGGACGGGCA
ACGACTGTTGCCACAACTGGTACGGTGTTAGCTGTGACCAGGAAACTCAC
CGGGTCGCTGACATTAACCTACGTGGCGAGTCTGAGGACCCGATATTCCA
GCGGGCCCACCGAACCGGGTACATGACCGGGTATATCTCACCCGCTGTGT
GTAAACTCACGCGTCTCTCCAGTTTAACGCTCGCCGACTGGAAAGGCATC
ACCGGGGAAATCCCACGTTGCATTTCTTCAATTCCTTTTCTCCGCATTCT
TGATTTAATCGGAAATAAGTTATCGGGCGACATTCCCCGAGATATTGGCC
GGCTTCACAGACTCGCTGTCTTAAATATCGCCGATAACAACATATCGGGT
GCGATTCCCCCTTCCATTGCTAATCTTTCCAGCTTGATGCATCTTGACTT
GCGTAACACAGAATTTCGGGCCCGATT
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