FC876392
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL3_BOVIN (Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.266e-33 Identity = 73/177 (41.24%), Postives = 103/177 (58.19%), Query Frame = 1 Query: 181 QAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPWDFSLVALALG 711 Q + + Q+P +TRTY A ++TT L+++SPF L +P LV + +Q WRLITNFLFF RYC++LEE SFRGRTADF++M LFG +T L+G + FL +LT M+VYVWS+++P + ++F GL TF A +L PW + + LG Sbjct: 4 QGLATEFLQVPAVTRTYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITNFLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLG-----------SLFFLGQALTAMLVYVWSRRSPGVRVNFFGLLTFQAPFL---PWALMGLPMLLG 166
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL3_HUMAN (Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 2.388e-32 Identity = 70/171 (40.94%), Postives = 99/171 (57.89%), Query Frame = 1 Query: 199 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPWDFSLVALALG 711 + Q+P +TR Y A ++TT L+++SPF L +P LV + +Q WRL+TNFLFF RYC++LEE SFRGRTADF++M LFG +T L+G + FL +L M+VYVWS+++P + ++F GL TF A +L PW +L LG Sbjct: 10 FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLG-----------SLFFLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFL---PWALMGFSLLLG 166
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL3_MOUSE (Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.920e-30 Identity = 68/171 (39.77%), Postives = 97/171 (56.73%), Query Frame = 1 Query: 199 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPWDFSLVALALG 711 + Q+P +TR Y A ++TT L+++SPF L +P LV + +Q WRLIT FLFF RYC++LEE SFRGR ADF++M LFG +T L+G + + FL +L M+VYVWS+++P + ++F GL F A +L PW +L LG Sbjct: 10 FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITTFLFFGPLGFGFFFNMLFVFRYCRMLEEGSFRGRKADFVFMFLFGGVLMT---LLGFL--------GSLFFLGQALMAMLVYVWSRRSPHVRVNFFGLLNFQAPFL---PWALMGFSLLLG 166
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL1_ARATH (Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.314e-22 Identity = 61/163 (37.42%), Postives = 88/163 (53.99%), Query Frame = 1 Query: 193 DWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPW 681 ++Y +P IT+ Y T TTV L +++P ++ L P LV+K +Q WRLITN F ARY LE+ F RTADFL+M++FG+ T+L+ +IP+ FL SL M++Y+WS++ P ++S GL T A YL PW Sbjct: 6 EFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLFFLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSF----TLLVLSVIPFFWTP-----FLGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYL---PW 156
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DER11_MAIZE (Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 5.519e-21 Identity = 63/176 (35.80%), Postives = 93/176 (52.84%), Query Frame = 1 Query: 193 DWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPWDFSLVALALGGLL 720 ++YK +P I++ Y T TTV L I+ P L L LV K ++ WRL+T+F F ARY +LE+ +F RTADFL+M++FGA ++L+ +IP L SF FL + M++YVWS++NP ++ GL + YL PW L+ + G L Sbjct: 6 EYYKSLPPISKAYGTLCFFTTVLVQLQILHPLFLYLDYPLVFKKFEIWRLLTSFFFLAPFSMKFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAI----SLLVLSIIP-LFNSF----FLGIPMVSMLLYVWSRENPNAQINIYGLVQLRSFYL---PWAMLLLDVIFGSSL 169
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL1_ORYSJ (Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 3.577e-20 Identity = 59/163 (36.20%), Postives = 84/163 (51.53%), Query Frame = 1 Query: 193 DWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPW 681 ++Y +P I++ Y T TV C L I++P L L+ V K +Q WRL T+F F K ARY LE+ +F RTADFL+M++FGA ++L IP+L I FL + M++YVWS++ P +S GL + YL PW Sbjct: 6 EYYNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFFFLGKFSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAI----SLLALSAIPFLD-----IYFLGVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYL---PW 156
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DER12_MAIZE (Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19 Identity = 59/176 (33.52%), Postives = 91/176 (51.70%), Query Frame = 1 Query: 193 DWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPWDFSLVALALGGLL 720 ++YK +P I++ Y T TTV L I++P L L+ V K ++ WR+ T+F F ARY +LE+ +F RTADFL+M++FGA ++L+ +IP L+ L + M+VYVWS++NP ++ G+ A YL PW L+ + G L Sbjct: 6 EYYKSLPPISKAYGTLCFFTTVLVRLHILNPLFLYLYYPRVFKKFEVWRIFTSFFFLGPFSINFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAI----SLLVLSVIPQLN-----TYVLGLPMVSMLVYVWSRENPNAQINIYGILQLKAFYL---PWVMLLLDVIFGSPL 169
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL1_DROME (Derlin-1 OS=Drosophila melanogaster GN=CG10908 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12 Identity = 49/165 (29.70%), Postives = 74/165 (44.85%), Query Frame = 1 Query: 196 WYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFF---RKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPW 681 WY+ +P TR +LTA +V ++ C D+I L L + V Q WR +T+ F +Y LE++ + AD+LY+L+ A IGGMI + FL ++L L + Y+W + N + +SF F A YL PW Sbjct: 6 WYRSLPRFTRYWLTATVVLSMLCRFDVIPLHWLHLDRSAVFSKLQLWRCMTSLFVFPISSNTAFHFLINCFFIVQYSSKLEKDQYSRSPADYLYLLIVSAVLAN----IGGMI-------FNVYFLMDTLVLAITYIWCQLNKDVTVSFWFGTRFKAMYL---PW 156
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL1_CAEEL (Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11 Identity = 47/173 (27.17%), Postives = 79/173 (45.66%), Query Frame = 1 Query: 187 VEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFR---KXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPWDFSLV 696 +E++ +PI+TR + A+ + + I+ + L LVV +QFWR +T +++ + Y K LE ++RGR+AD+L+ML+F F +G + I FL + + ++YVW + N +SF F A YL W F+ V Sbjct: 3 LENFLLGIPIVTRYWFLASTIIPLLGRFGFINVQWMFLQWDLVVNKFQFWRPLTALIYYPVTPQTGFHWLMMCYFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMA-----------LDIYFLLEPMVISVLYVWCQVNKDTIVSFWFGMRFPARYLPWVLWGFNAV 164 The following BLAST results are available for this feature:
BLAST of FC876392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876392 ID=FC876392; Name=FC876392; organism=Citrus clementina; type=EST; length=720bpback to top |