FC876392

Overview
NameFC876392
Unique NameFC876392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876392_ssr133 microsatellite FC876392_ssr133:133..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig591 contig Ccv1_Contig591:14..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL3_BOVIN (Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.266e-33
Identity = 73/177 (41.24%), Postives = 103/177 (58.19%), Query Frame = 1
Query:  181 QAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPWDFSLVALALG 711
            Q +   + Q+P +TRTY  A ++TT    L+++SPF L  +P LV + +Q WRLITNFLFF               RYC++LEE SFRGRTADF++M LFG   +T   L+G            + FL  +LT M+VYVWS+++P + ++F GL TF A +L   PW    + + LG
Sbjct:    4 QGLATEFLQVPAVTRTYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITNFLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLG-----------SLFFLGQALTAMLVYVWSRRSPGVRVNFFGLLTFQAPFL---PWALMGLPMLLG 166          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL3_HUMAN (Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.388e-32
Identity = 70/171 (40.94%), Postives = 99/171 (57.89%), Query Frame = 1
Query:  199 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPWDFSLVALALG 711
            + Q+P +TR Y  A ++TT    L+++SPF L  +P LV + +Q WRL+TNFLFF               RYC++LEE SFRGRTADF++M LFG   +T   L+G            + FL  +L  M+VYVWS+++P + ++F GL TF A +L   PW     +L LG
Sbjct:   10 FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLG-----------SLFFLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFL---PWALMGFSLLLG 166          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL3_MOUSE (Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.920e-30
Identity = 68/171 (39.77%), Postives = 97/171 (56.73%), Query Frame = 1
Query:  199 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPWDFSLVALALG 711
            + Q+P +TR Y  A ++TT    L+++SPF L  +P LV + +Q WRLIT FLFF               RYC++LEE SFRGR ADF++M LFG   +T   L+G +          + FL  +L  M+VYVWS+++P + ++F GL  F A +L   PW     +L LG
Sbjct:   10 FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITTFLFFGPLGFGFFFNMLFVFRYCRMLEEGSFRGRKADFVFMFLFGGVLMT---LLGFL--------GSLFFLGQALMAMLVYVWSRRSPHVRVNFFGLLNFQAPFL---PWALMGFSLLLG 166          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL1_ARATH (Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.314e-22
Identity = 61/163 (37.42%), Postives = 88/163 (53.99%), Query Frame = 1
Query:  193 DWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPW 681
            ++Y  +P IT+ Y T    TTV   L +++P ++ L P LV+K +Q WRLITN  F               ARY   LE+  F  RTADFL+M++FG+     T+L+  +IP+         FL  SL  M++Y+WS++ P  ++S  GL T  A YL   PW
Sbjct:    6 EFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLFFLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSF----TLLVLSVIPFFWTP-----FLGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYL---PW 156          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DER11_MAIZE (Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.519e-21
Identity = 63/176 (35.80%), Postives = 93/176 (52.84%), Query Frame = 1
Query:  193 DWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPWDFSLVALALGGLL 720
            ++YK +P I++ Y T    TTV   L I+ P  L L   LV K ++ WRL+T+F F               ARY  +LE+ +F  RTADFL+M++FGA     ++L+  +IP L  SF    FL   +  M++YVWS++NP   ++  GL    + YL   PW   L+ +  G  L
Sbjct:    6 EYYKSLPPISKAYGTLCFFTTVLVQLQILHPLFLYLDYPLVFKKFEIWRLLTSFFFLAPFSMKFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAI----SLLVLSIIP-LFNSF----FLGIPMVSMLLYVWSRENPNAQINIYGLVQLRSFYL---PWAMLLLDVIFGSSL 169          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL1_ORYSJ (Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.577e-20
Identity = 59/163 (36.20%), Postives = 84/163 (51.53%), Query Frame = 1
Query:  193 DWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPW 681
            ++Y  +P I++ Y T     TV C L I++P  L L+   V K +Q WRL T+F F  K            ARY   LE+ +F  RTADFL+M++FGA     ++L    IP+L      I FL   +  M++YVWS++ P   +S  GL    + YL   PW
Sbjct:    6 EYYNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFFFLGKFSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAI----SLLALSAIPFLD-----IYFLGVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYL---PW 156          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DER12_MAIZE (Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19
Identity = 59/176 (33.52%), Postives = 91/176 (51.70%), Query Frame = 1
Query:  193 DWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPWDFSLVALALGGLL 720
            ++YK +P I++ Y T    TTV   L I++P  L L+   V K ++ WR+ T+F F               ARY  +LE+ +F  RTADFL+M++FGA     ++L+  +IP L+        L   +  M+VYVWS++NP   ++  G+    A YL   PW   L+ +  G  L
Sbjct:    6 EYYKSLPPISKAYGTLCFFTTVLVRLHILNPLFLYLYYPRVFKKFEVWRIFTSFFFLGPFSINFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAI----SLLVLSVIPQLN-----TYVLGLPMVSMLVYVWSRENPNAQINIYGILQLKAFYL---PWVMLLLDVIFGSPL 169          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL1_DROME (Derlin-1 OS=Drosophila melanogaster GN=CG10908 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 49/165 (29.70%), Postives = 74/165 (44.85%), Query Frame = 1
Query:  196 WYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFF---RKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPW 681
            WY+ +P  TR +LTA +V ++ C  D+I    L L  + V    Q WR +T+   F                  +Y   LE++ +    AD+LY+L+  A        IGGMI         + FL ++L L + Y+W + N  + +SF     F A YL   PW
Sbjct:    6 WYRSLPRFTRYWLTATVVLSMLCRFDVIPLHWLHLDRSAVFSKLQLWRCMTSLFVFPISSNTAFHFLINCFFIVQYSSKLEKDQYSRSPADYLYLLIVSAVLAN----IGGMI-------FNVYFLMDTLVLAITYIWCQLNKDVTVSFWFGTRFKAMYL---PW 156          
BLAST of FC876392 vs. ExPASy Swiss-Prot
Match: DERL1_CAEEL (Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 47/173 (27.17%), Postives = 79/173 (45.66%), Query Frame = 1
Query:  187 VEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFR---KXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLHGCPWDFSLV 696
            +E++   +PI+TR +  A+ +  +      I+   + L   LVV  +QFWR +T  +++    +              Y K LE  ++RGR+AD+L+ML+F   F +G  +              I FL   + + ++YVW + N    +SF     F A YL    W F+ V
Sbjct:    3 LENFLLGIPIVTRYWFLASTIIPLLGRFGFINVQWMFLQWDLVVNKFQFWRPLTALIYYPVTPQTGFHWLMMCYFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMA-----------LDIYFLLEPMVISVLYVWCQVNKDTIVSFWFGMRFPARYLPWVLWGFNAV 164          
The following BLAST results are available for this feature:
BLAST of FC876392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
DERL3_BOVIN1.266e-3341.24Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1[more]
DERL3_HUMAN2.388e-3240.94Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2[more]
DERL3_MOUSE2.920e-3039.77Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1[more]
DERL1_ARATH1.314e-2237.42Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1[more]
DER11_MAIZE5.519e-2135.80Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2[more]
DERL1_ORYSJ3.577e-2036.20Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 P... [more]
DER12_MAIZE1.359e-1933.52Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1[more]
DERL1_DROME2.745e-1229.70Derlin-1 OS=Drosophila melanogaster GN=CG10908 PE=... [more]
DERL1_CAEEL5.178e-1127.17Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC32004C03EF DevOvary1 Citrus clementina cDNA clone C32004C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876392 ID=FC876392; Name=FC876392; organism=Citrus clementina; type=EST; length=720bp
GGACGAAAAGAATTGAAAGCTCTCTCCCGATCTATCTCCACAATCAAAAA
CCCCCCTTTATTTTTCACTTCACTCAGAAATCTTTAAATTTTCAAAAAGA
AAAAAAAAATCAGCACACTTTCGGGGCTCTAGAGATAGATAGATAAACCA
TATAGTCAAAAAAATTAAAAGAAAATGGCTCAGGCTGTTGAAGATTGGTA
CAAACAGATGCCTATCATCACCCGCACGTATCTCACAGCCGCTATCGTCA
CCACCGTCGGCTGCTCTCTCGATATAATATCTCCTTTTAATCTGTGCTTG
CACCCAACGTTAGTGGTTAAGCATTATCAGTTTTGGCGCCTTATCACCAA
TTTTCTCTTCTTCCGGAAAATGGATTTAGATTTTTTGTTCCATATGTTTT
TTCTCGCACGATACTGCAAGCTTCTTGAAGAGAATTCCTTCAGGGGAAGG
ACTGCAGATTTCTTGTACATGCTTTTATTTGGAGCCACTTTTCTAACTGG
CACTGTTCTTATTGGGGGGATGATACCTTACTTGTCAGAATCATTTGCAA
AAATCATTTTCCTTAGCAATTCATTGACACTCATGATGGTTTATGTATGG
AGCAAACAAAATCCTTTCATCCACATGAGTTTTTTGGGCCTTTTTACATT
TACAGCAGCTTACTTACATGGGTGCCCTTGGGATTTCAGTCTCGTTGCGC
TAGCGCTGGGTGGATTGCTG
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