FC876397

Overview
NameFC876397
Unique NameFC876397
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:101..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 5.642e-43
Identity = 82/121 (67.77%), Postives = 100/121 (82.64%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKY 363
            SLGFLPRKR++RHRGKVK+FPKDD SKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TPRGLR+  T++A+H+++E +RRFYKN   SKKKAFTKY
Sbjct:   13 SLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKY 133          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.368e-43
Identity = 83/121 (68.60%), Postives = 97/121 (80.17%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKY 363
            SL +LPRKRAARHRGKVK+FPKDD  KP  LTA +GYKAGMT IVRD+++PG+K HKKE  EAVTII+T          Y++TPRGLRSL TVWA+HL++EV+RRFYKN   SKKKAFTKY
Sbjct:   13 SLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDLDRPGAKAHKKEVVEAVTIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKY 133          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.257e-42
Identity = 83/121 (68.60%), Postives = 98/121 (80.99%), Query Frame = 1
Query:    4 LGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKYS 366
            LGFLPRKRAA  RG+VK+FPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAVT+++T          YV+TPRGLRSL TVWA+HL++EV+RRFYKN   SKKKAFTKYS
Sbjct:   14 LGFLPRKRAASVRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYS 134          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.642e-42
Identity = 83/122 (68.03%), Postives = 98/122 (80.33%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKYS 366
            SLGFLPRKR+A  RG+VK+FPKD  SKP  LTAFLGYKAGMT +VRD+++PGSK+HK+E  EA T+++T          YV+TPRGLRSL TVWA+HL+EEVRRRFYKN   SKKKAFTKYS
Sbjct:   13 SLGFLPRKRSANIRGRVKSFPKDVKSKPVALTAFLGYKAGMTTVVRDLDRPGSKMHKREIVEAATVVDTPPLVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYKNWYKSKKKAFTKYS 134          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 170.244 bits (430), Expect = 2.800e-42
Identity = 83/121 (68.60%), Postives = 97/121 (80.17%), Query Frame = 1
Query:    4 LGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKYS 366
            LGFLPRKRAA  R +VKAFPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAVT+++T          YV+TPRGLRSL TVWA+HL++EV+RRFYKN   SKKKAFTKYS
Sbjct:   14 LGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYS 134          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.238e-42
Identity = 81/121 (66.94%), Postives = 98/121 (80.99%), Query Frame = 1
Query:    4 LGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKYS 366
            LGFLPRKRAA  RG+VK+FPKDD +KP  LT+FLGYKAGM+ IVRD+++PGSK HK+E  EAVT+++T          YV+TPRGLRSL TVWA+HL++EV+RRFYKN   SKKKAFTKYS
Sbjct:   14 LGFLPRKRAASVRGRVKSFPKDDQTKPVALTSFLGYKAGMSTIVRDLDRPGSKFHKREVVEAVTVVDTPPIVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYS 134          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.815e-41
Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 1
Query:    4 LGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKYS 366
            +GF P+KR+  +RG++KAFPKDD SKP  LTAFLGYKAGMTHIVRDV+KPGSK++KKE  EAVTI+ET          YV TP+G R+L T+WA+HL+EE RRRFY N   SKKKAFTKY+
Sbjct:   14 MGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYA 134          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 4.043e-41
Identity = 80/122 (65.57%), Postives = 95/122 (77.87%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKYS 366
            S+ F P+KR+ARHRGKVKAFPKDD SKP  LT F+GYKAGMTHIVR+ ++PGSK++KKE  EAVT++ET          Y++TP GLR+L  VWAQHL+EE RRRFYKN   SKKKAFTK S
Sbjct:   13 SMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKAS 134          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 5.281e-41
Identity = 78/121 (64.46%), Postives = 95/121 (78.51%), Query Frame = 1
Query:    4 LGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKYS 366
            +GF P+KR+  +RG++KAFPKDD SKP  LTAFLGYKAGMTHIVRDV+KPGSK++KKE  EAV+IIET          Y+ TP+G R+L T+WA+HL+EE RRRFY N   SKKKAFTKY+
Sbjct:   14 MGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYA 134          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.536e-40
Identity = 78/119 (65.55%), Postives = 96/119 (80.67%), Query Frame = 1
Query:    4 LGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTK 360
            LGFLPRKRAA  RG+VKAFPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAV++++T          Y++TPRGLRSL TVWA+HL++E++RRFYKN   SKKKAFT+
Sbjct:   14 LGFLPRKRAASIRGRVKAFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVSVVDTPPMVVVGVVGYIETPRGLRSLTTVWAEHLSDEIKRRFYKNWYKSKKKAFTQ 132          
The following BLAST results are available for this feature:
BLAST of FC876397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RL3_BOVIN5.642e-4367.7760S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_NEUCR7.368e-4368.6060S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]
RL3_CANGA1.257e-4268.6060S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]
RL3_DEBHA1.642e-4268.0360S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3_YEAST2.800e-4268.6060S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3_KLULA6.238e-4266.9460S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3_CAEEL1.815e-4165.2960S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_DROME4.043e-4165.5760S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_CAEBR5.281e-4164.4660S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3_ASHGO1.536e-4065.5560S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]

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Properties
Property NameValue
Genbank descriptionC32004C08EF DevOvary1 Citrus clementina cDNA clone C32004C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876397 ID=FC876397; Name=FC876397; organism=Citrus clementina; type=EST; length=367bp
TCCCTTGGATTTCTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGAAAGGT
GAAGGCTTTTCCCAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCT
TTTTGGGTTACAAGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAA
CCTGGATCTAAGCTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTAT
TGAAACCCCTCCAATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACAC
CTCGTGGACTTCGCTCTTTGAACACTGTATGGGCTCAGCATCTTAATGAG
GAGGTGAGAAGAAGGTTCTACAAGAACTGTTGCTAATCCAAGAAGAAGGC
TTTCACAAAATACTCAA
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