FC876397

Overview
NameFC876397
Unique NameFC876397
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:101..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 3.784e-39
Identity = 76/122 (62.30%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKYS 366
            S+GF P+KR+ RHRGKVKAFPKDDP+KP  LTAF+ +KAGMTHIVR+V+KPGSK++KKE  EAVTI E           Y+ TPRG R   TVWA+HL+E+ R RFYKN   SKKKAF K++
Sbjct:   13 SMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVDKPGSKVNKKEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYKNWHTSKKKAFQKHA 134          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 8.431e-39
Identity = 79/122 (64.75%), Postives = 94/122 (77.05%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SK-KKAFTKY 363
            +LGF PRKRAARH+GKVK+FPKDD ++   LTAF+GYKAGMTH+VRD+EKPGSK+HKKE  EAVTIIE           YV+T +GL++  TVWAQHL++  RRR YKN   SK KKAFTKY
Sbjct:   13 NLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYKNWYKSKSKKAFTKY 134          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 7.137e-38
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    4 LGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTK 360
            LGFLP KR+ RHRGKVK +P+DDPS+P  LTAFLGYKAGMTH +R+V +PG K+ K+E  EAVTI+ET          YV TPRGLRS  T++A+HL++E RRRFYK+   SKKKAFTK
Sbjct:   14 LGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTK 132          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 7.137e-38
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    4 LGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTK 360
            LGFLP KR+ RHRGKVK +P+DDPS+P  LTAFLGYKAGMTH +R+V +PG K+ K+E  EAVTI+ET          YV TPRGLRS  T++A+HL++E RRRFYK+   SKKKAFTK
Sbjct:   14 LGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTK 132          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.310e-15
Identity = 49/118 (41.53%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVR-DVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKA 351
            SL F PRKR+   R    AFP DD S+P  LT F+ YKAGMTH+VR   +   +K   +E  +AVT++E           Y KT  GLR L  V A ++++ V RR + N   SK+ A
Sbjct:   13 SLQFCPRKRSKTIRPAAGAFPADDRSQPVHLTGFMAYKAGMTHVVRTKTQVAKNKQLSREIMDAVTVLEAPPMVVYGIVGYEKTVTGLRRLPIVTAAYVSDGVLRRMFGNRYASKESA 130          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_AERPE (50S ribosomal protein L3P OS=Aeropyrum pernix GN=rpl3p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.658e-13
Identity = 49/107 (45.79%), Postives = 60/107 (56.07%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP-RGLRSLNTVWAQHLNE-EVRRR 315
            SLGF PRKRA+R   +VK +P+ D  KP  L AFLGY+AGMTH+    ++PG     KE    VTI+ET          Y   P RG  SL   WAQ   E E++RR
Sbjct:   13 SLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRR 118          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRR 312
            S+GF PR RAA    +  ++P DD  +P  L  F GYKAGM+H+V   ++P S    +E    VT++ET          Y  TP G R L  VW   ++E++ R
Sbjct:   11 SMGFSPRSRAASEVPRFNSWP-DDEGQP-GLQGFAGYKAGMSHVVAINDEPNSPREGQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLER 112          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.147e-11
Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPK-DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRR 315
            S+ F PRKRAAR   +VK++P+ D+P     L A  GYKAGMTH++    +  S     E    VTI+E           Y KT RGL++L  V A    +++RR+
Sbjct:   11 SVAFSPRKRAARETPRVKSWPQVDEPG----LLALAGYKAGMTHVMMVDNQKNSPTEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRK 112          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.556e-11
Identity = 39/104 (37.50%), Postives = 51/104 (49.04%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRR 312
            S+GF PRKRA     +  ++P DD      L  F GYKAGMTH+V   +K  +     ET   VT++ET          Y  TP G + L  VWA   +E + R
Sbjct:   11 SMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDR 112          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.556e-11
Identity = 39/104 (37.50%), Postives = 51/104 (49.04%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRR 312
            S+GF PRKRA     +  ++P DD      L  F GYKAGMTH+V   +K  +     ET   VT++ET          Y  TP G + L  VWA   +E + R
Sbjct:   11 SMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDR 112          
The following BLAST results are available for this feature:
BLAST of FC876397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RL3_TOXCA3.784e-3962.3060S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_DICDI8.431e-3964.7560S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3L_HUMAN7.137e-3863.0360S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3L_BOVIN7.137e-3863.0360S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_ENCCU1.310e-1541.5360S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]
RL3_AERPE4.658e-1345.7950S ribosomal protein L3P OS=Aeropyrum pernix GN=r... [more]
RL3_NATPD6.727e-1237.5050S ribosomal protein L3P OS=Natronomonas pharaoni... [more]
RL3_METTH1.147e-1138.6850S ribosomal protein L3P OS=Methanobacterium ther... [more]
RL3_HALSA2.556e-1137.5050S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_HALS32.556e-1137.5050S ribosomal protein L3P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionC32004C08EF DevOvary1 Citrus clementina cDNA clone C32004C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876397 ID=FC876397; Name=FC876397; organism=Citrus clementina; type=EST; length=367bp
TCCCTTGGATTTCTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGAAAGGT
GAAGGCTTTTCCCAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCT
TTTTGGGTTACAAGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAA
CCTGGATCTAAGCTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTAT
TGAAACCCCTCCAATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACAC
CTCGTGGACTTCGCTCTTTGAACACTGTATGGGCTCAGCATCTTAATGAG
GAGGTGAGAAGAAGGTTCTACAAGAACTGTTGCTAATCCAAGAAGAAGGC
TTTCACAAAATACTCAA
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