FC876397
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 3.784e-39 Identity = 76/122 (62.30%), Postives = 92/122 (75.41%), Query Frame = 1 Query: 1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTKYS 366 S+GF P+KR+ RHRGKVKAFPKDDP+KP LTAF+ +KAGMTHIVR+V+KPGSK++KKE EAVTI E Y+ TPRG R TVWA+HL+E+ R RFYKN SKKKAF K++ Sbjct: 13 SMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVDKPGSKVNKKEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYKNWHTSKKKAFQKHA 134
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 8.431e-39 Identity = 79/122 (64.75%), Postives = 94/122 (77.05%), Query Frame = 1 Query: 1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SK-KKAFTKY 363 +LGF PRKRAARH+GKVK+FPKDD ++ LTAF+GYKAGMTH+VRD+EKPGSK+HKKE EAVTIIE YV+T +GL++ TVWAQHL++ RRR YKN SK KKAFTKY Sbjct: 13 NLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYKNWYKSKSKKAFTKY 134
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3) HSP 1 Score: 155.606 bits (392), Expect = 7.137e-38 Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 1 Query: 4 LGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTK 360 LGFLP KR+ RHRGKVK +P+DDPS+P LTAFLGYKAGMTH +R+V +PG K+ K+E EAVTI+ET YV TPRGLRS T++A+HL++E RRRFYK+ SKKKAFTK Sbjct: 14 LGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTK 132
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3) HSP 1 Score: 155.606 bits (392), Expect = 7.137e-38 Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 1 Query: 4 LGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKAFTK 360 LGFLP KR+ RHRGKVK +P+DDPS+P LTAFLGYKAGMTH +R+V +PG K+ K+E EAVTI+ET YV TPRGLRS T++A+HL++E RRRFYK+ SKKKAFTK Sbjct: 14 LGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTK 132
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.310e-15 Identity = 49/118 (41.53%), Postives = 65/118 (55.08%), Query Frame = 1 Query: 1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVR-DVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRRFYKNCC*SKKKA 351 SL F PRKR+ R AFP DD S+P LT F+ YKAGMTH+VR + +K +E +AVT++E Y KT GLR L V A ++++ V RR + N SK+ A Sbjct: 13 SLQFCPRKRSKTIRPAAGAFPADDRSQPVHLTGFMAYKAGMTHVVRTKTQVAKNKQLSREIMDAVTVLEAPPMVVYGIVGYEKTVTGLRRLPIVTAAYVSDGVLRRMFGNRYASKESA 130
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_AERPE (50S ribosomal protein L3P OS=Aeropyrum pernix GN=rpl3p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.658e-13 Identity = 49/107 (45.79%), Postives = 60/107 (56.07%), Query Frame = 1 Query: 1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP-RGLRSLNTVWAQHLNE-EVRRR 315 SLGF PRKRA+R +VK +P+ D KP L AFLGY+AGMTH+ ++PG KE VTI+ET Y P RG SL WAQ E E++RR Sbjct: 13 SLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRR 118
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12 Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 1 Query: 1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRR 312 S+GF PR RAA + ++P DD +P L F GYKAGM+H+V ++P S +E VT++ET Y TP G R L VW ++E++ R Sbjct: 11 SMGFSPRSRAASEVPRFNSWP-DDEGQP-GLQGFAGYKAGMSHVVAINDEPNSPREGQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLER 112
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.147e-11 Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 1 Query: 1 SLGFLPRKRAARHRGKVKAFPK-DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRR 315 S+ F PRKRAAR +VK++P+ D+P L A GYKAGMTH++ + S E VTI+E Y KT RGL++L V A +++RR+ Sbjct: 11 SVAFSPRKRAARETPRVKSWPQVDEPG----LLALAGYKAGMTHVMMVDNQKNSPTEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRK 112
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3) HSP 1 Score: 67.3958 bits (163), Expect = 2.556e-11 Identity = 39/104 (37.50%), Postives = 51/104 (49.04%), Query Frame = 1 Query: 1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRR 312 S+GF PRKRA + ++P DD L F GYKAGMTH+V +K + ET VT++ET Y TP G + L VWA +E + R Sbjct: 11 SMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDR 112
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.556e-11 Identity = 39/104 (37.50%), Postives = 51/104 (49.04%), Query Frame = 1 Query: 1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRR 312 S+GF PRKRA + ++P DD L F GYKAGMTH+V +K + ET VT++ET Y TP G + L VWA +E + R Sbjct: 11 SMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDR 112 The following BLAST results are available for this feature:
BLAST of FC876397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876397 ID=FC876397; Name=FC876397; organism=Citrus clementina; type=EST; length=367bpback to top |