FC876397

Overview
NameFC876397
Unique NameFC876397
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:101..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5)

HSP 1 Score: 67.3958 bits (163), Expect = 2.556e-11
Identity = 39/104 (37.50%), Postives = 50/104 (48.08%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRR 312
            SLGF PRKR+     +  ++P DD     +   F GYKAGMTH+V   ++P S     E    VT+IET          Y  TP G R L  VW    + E+ R
Sbjct:   11 SLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDR 112          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_METMP (50S ribosomal protein L3P OS=Methanococcus maripaludis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.338e-11
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRR 315
            SL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S    +E    VT++ET          Y KT +GL++L  VWA+ L+ ++ R+
Sbjct:   12 SLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNSSQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDSDLGRK 113          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_METM7 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.338e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRR 315
            SL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ET          Y KT +GL++L  VWA+ L+ ++ R+
Sbjct:   12 SLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDNDLGRK 113          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.694e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRR 315
            SL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ET          Y KT +GL++L  VWA+ L+ ++ R+
Sbjct:   12 SLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDGDLGRK 113          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.437e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRR 315
            SL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ET          Y KT +GL++L  VWA+  ++E+ R+
Sbjct:   12 SLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRK 113          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.437e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRR 315
            SL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ET          Y KT +GL++L  VWA+  ++E+ R+
Sbjct:   12 SLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRK 113          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.437e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRR 315
            SL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ET          Y KT +GL++L  VWA+ L+ ++ R+
Sbjct:   12 SLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLQALTEVWAEQLDGDLGRK 113          
BLAST of FC876397 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.437e-11
Identity = 38/105 (36.19%), Postives = 57/105 (54.29%), Query Frame = 1
Query:    1 SLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLNEEVRRR 315
            SL F PRKRA     +++A+P+ D     R+  F GYKAGMTH+V   ++  S  + +E    VT+IET          Y KT  G++    VW+ +L++ + RR
Sbjct:   10 SLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKNSPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRR 111          
The following BLAST results are available for this feature:
BLAST of FC876397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RL3_HALMA2.556e-1137.5050S ribosomal protein L3P OS=Haloarcula marismortu... [more]
RL3_METMP3.338e-1137.1450S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM73.338e-1137.1450S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM55.694e-1137.1450S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METVS7.437e-1137.1450S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METVA7.437e-1137.1450S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METM67.437e-1137.1450S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_ARCFU7.437e-1136.1950S ribosomal protein L3P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionC32004C08EF DevOvary1 Citrus clementina cDNA clone C32004C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876397 ID=FC876397; Name=FC876397; organism=Citrus clementina; type=EST; length=367bp
TCCCTTGGATTTCTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGAAAGGT
GAAGGCTTTTCCCAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCT
TTTTGGGTTACAAGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAA
CCTGGATCTAAGCTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTAT
TGAAACCCCTCCAATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACAC
CTCGTGGACTTCGCTCTTTGAACACTGTATGGGCTCAGCATCTTAATGAG
GAGGTGAGAAGAAGGTTCTACAAGAACTGTTGCTAATCCAAGAAGAAGGC
TTTCACAAAATACTCAA
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