FC876398

Overview
NameFC876398
Unique NameFC876398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:13..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 1.035e-72
Identity = 131/220 (59.55%), Postives = 167/220 (75.91%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712
            MSHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDD SKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TPRGLR+  TV+A+H+S+E +RRFYKNW             +++ D GKK ++     +KKY  V+R++AHTQ+R +  L+QKKAHLMEIQVNGGT+AEK+D+A    E+ +PV+ VF +DEMID+
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDV 219          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 272.707 bits (696), Expect = 1.351e-72
Identity = 130/219 (59.36%), Postives = 164/219 (74.89%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709
            MSHRKF  PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP  LTAF+ +KAGMTHIVR+V+KPGSK++KKE  EAVTI E           Y+ TPRG R   TVWA+HLSE+ R RFYKNW             +++ ++G+KSI+A L K+KKY S +RV+AHTQ++ MK  ++KKAH+MEIQ+NGGT+AEKVD+A    EK +PVD+VF +DEMID
Sbjct:    1 MSHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVDKPGSKVNKKEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYKNWHTSKKKAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKH-REKKAHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMID 218          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.010e-72
Identity = 135/220 (61.36%), Postives = 167/220 (75.91%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712
            MSHRK+E PRHGSLGFLPRKR+A  RG+VK+FPKD  SKP  LTAFLGYKAGMT +VRD+++PGSK+HK+E  EA T+++T          YV+TPRGLRSL TVWA+HLSEEVRRRFYKNW             +Y  D  +  ++ +L +IKKYASVVRVLAHTQI+K   L QKKAHL EIQVNGG++++KVD+A   FEK + VD+VF+KDEM+D+
Sbjct:    1 MSHRKYEAPRHGSLGFLPRKRSANIRGRVKSFPKDVKSKPVALTAFLGYKAGMTTVVRDLDRPGSKMHKREIVEAATVVDTPPLVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYKNWYKSKKKAFTKYSAKYAQDGAQ--VERELARIKKYASVVRVLAHTQIKKTP-LAQKKAHLAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDV 217          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 5.134e-72
Identity = 136/221 (61.54%), Postives = 166/221 (75.11%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWC-XXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712
            MSHRKFE PRHG+LGF PRKRAARH+GKVK+FPKDD ++   LTAF+GYKAGMTH+VRD+EKPGSK+HKKE  EAVTIIE           YV+T +GL++  TVWAQHLS+  RRR YKNW              QYET+EGKKSI+A L+ IKK  SVVRV+AHTQ+ K+K L QKKAH++EIQVNGG+I EKV++A   FEK + V  VF ++E+ID+
Sbjct:    1 MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLK-LTQKKAHVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDV 220          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 6.706e-72
Identity = 129/220 (58.64%), Postives = 166/220 (75.45%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712
            MSHRKF  PRHGSLGFLPRKR++RHRGKVK+FPKDD SKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ET          YV+TPRGLR+  T++A+H+S+E +RRFYKNW             +++  +GKK ++     +KKY  V+RV+AHTQ+R +  L+QKKAHLME+QVNGGT+AEK+D+A    E+ +PV  VF +DEMID+
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDV 219          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 266.159 bits (679), Expect = 1.265e-70
Identity = 136/219 (62.10%), Postives = 163/219 (74.43%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709
            MSHRK+E PRHG LGFLPRKRAA  R +VKAFPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAVT+++T          YV+TPRGLRSL TVWA+HLS+EV+RRFYKNW             +Y  D     I+ +L +IKKYASVVRVL HTQIRK   L QKKAHL EIQ+NGG+I+EKVD+A   FEK + VD+VF+++EMID
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDGA--GIERELARIKKYASVVRVLVHTQIRKTP-LAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMID 216          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.652e-70
Identity = 132/220 (60.00%), Postives = 166/220 (75.45%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712
            MSHRK+E PRHG LGFLPRKRAA  RG+VKAFPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAV++++T          Y++TPRGLRSL TVWA+HLS+E++RRFYKNW                  +G  +I+ +L +IKKYASVVRVLAHTQ+RK   L QKKAHL EIQ+NGG+++EKVD+A   FEK + VD+VF+++EMID+
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASIRGRVKAFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVSVVDTPPMVVVGVVGYIETPRGLRSLTTVWAEHLSDEIKRRFYKNWYKSKKKAFTQVPPPSTAQDG-AAIERELARIKKYASVVRVLAHTQVRKTP-LVQKKAHLAEIQLNGGSVSEKVDWAREHFEKTVSVDSVFEQNEMIDV 218          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.817e-70
Identity = 128/219 (58.45%), Postives = 161/219 (73.52%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709
            MSHRKF  PRHG +GF P+KR+  +RG++KAFPKDD SKP  LTAFLGYKAGMTHIVRDV+KPGSK++KKE  EAVTI+ET          YV TP+G R+L T+WA+HLSEE RRRFY NW             +++ ++GKK I+A   K+KKY S +RV+AHTQ++ ++  +QKKAHL+EIQVNGGTI +KVD+A    EK + VD VF +DEMID
Sbjct:    1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR-RRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMID 218          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.276e-70
Identity = 133/219 (60.73%), Postives = 164/219 (74.89%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709
            MSHRK+E PRHG LGFLPRKRAA  RG+VK+FPKDD SKP  LT+FLGYKAGMT IVRD+++PGSK HK+E  EAVT+++T          YV+TPRGLRSL TVWA+HLS+EV+RRFYKNW             +Y   +    I+ +L +IKKYA+VVRVL HTQ+RK   L QKKAHL EIQ+NGG+I+EKVD+A   FEK + VD+VF+++EMID
Sbjct:    1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYA--QNGAEIERELARIKKYATVVRVLVHTQVRKTP-LVQKKAHLAEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMID 216          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 6.276e-70
Identity = 127/219 (57.99%), Postives = 161/219 (73.52%), Query Frame = 2
Query:   53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709
            MSHRKF  PRHG +GF P+KR+  +RG++KAFPKDD SKP  LTAFLGYKAGMTHIVRDV+KPGSK++KKE  EAV+IIET          Y+ TP+G R+L T+WA+HLSEE RRRFY NW             +++ ++GKK I+A   K+KKY S +RV+AHTQ++ ++  +QKKAHL+EIQ+NGGTI +KVD+A    EK I VD VF +DEMID
Sbjct:    1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR-RRQKKAHLVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMID 218          
The following BLAST results are available for this feature:
BLAST of FC876398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL3_MOUSE1.035e-7259.5560S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_TOXCA1.351e-7259.3660S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_DEBHA3.010e-7261.3660S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3_DICDI5.134e-7261.5460S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_BOVIN6.706e-7258.6460S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_YEAST1.265e-7062.1060S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3_ASHGO1.652e-7060.0060S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3_CAEEL2.817e-7058.4560S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_CANGA6.276e-7060.7360S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]
RL3_CAEBR6.276e-7057.9960S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004C09EF DevOvary1 Citrus clementina cDNA clone C32004C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876398 ID=FC876398; Name=FC876398; organism=Citrus clementina; type=EST; length=714bp
GCCAGCTCTAGAGCACAACGAGTCAGTCGCCGCAGCAGCTCAGAGGAGGA
GAATGTCTCACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGATTT
CTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTTTCC
CAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTTACA
AGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAACCTGGATCTAAG
CTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCCCTCC
AATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGTCTTC
GCTCTTTGAACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGAAGA
AGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAAATA
CTCAAAGCAGTATGAAACAGATGAAGGGAAGAAAAGTATCCAAGCTCAGC
TGGAGAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACT
CAGATTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGA
AATCCAGGTCAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCATATG
GCTTCTTTGAAAAAGCAATTCCTGTTGATGCTGTTTTCCAGAAAGATGAG
ATGATTGACATCAT
back to top