FC876398
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2) HSP 1 Score: 273.092 bits (697), Expect = 1.035e-72 Identity = 131/220 (59.55%), Postives = 167/220 (75.91%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 MSHRKF PRHGSLGFLPRKR++RHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V++PGSK++KKE EAVTI+ET YV+TPRGLR+ TV+A+H+S+E +RRFYKNW +++ D GKK ++ +KKY V+R++AHTQ+R + L+QKKAHLMEIQVNGGT+AEK+D+A E+ +PV+ VF +DEMID+ Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDV 219
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2) HSP 1 Score: 272.707 bits (696), Expect = 1.351e-72 Identity = 130/219 (59.36%), Postives = 164/219 (74.89%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP LTAF+ +KAGMTHIVR+V+KPGSK++KKE EAVTI E Y+ TPRG R TVWA+HLSE+ R RFYKNW +++ ++G+KSI+A L K+KKY S +RV+AHTQ++ MK ++KKAH+MEIQ+NGGT+AEKVD+A EK +PVD+VF +DEMID Sbjct: 1 MSHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVDKPGSKVNKKEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYKNWHTSKKKAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKH-REKKAHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMID 218
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 3.010e-72 Identity = 135/220 (61.36%), Postives = 167/220 (75.91%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 MSHRK+E PRHGSLGFLPRKR+A RG+VK+FPKD SKP LTAFLGYKAGMT +VRD+++PGSK+HK+E EA T+++T YV+TPRGLRSL TVWA+HLSEEVRRRFYKNW +Y D + ++ +L +IKKYASVVRVLAHTQI+K L QKKAHL EIQVNGG++++KVD+A FEK + VD+VF+KDEM+D+ Sbjct: 1 MSHRKYEAPRHGSLGFLPRKRSANIRGRVKSFPKDVKSKPVALTAFLGYKAGMTTVVRDLDRPGSKMHKREIVEAATVVDTPPLVVVGVVGYVETPRGLRSLTTVWAEHLSEEVRRRFYKNWYKSKKKAFTKYSAKYAQDGAQ--VERELARIKKYASVVRVLAHTQIKKTP-LAQKKAHLAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDV 217
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2) HSP 1 Score: 270.781 bits (691), Expect = 5.134e-72 Identity = 136/221 (61.54%), Postives = 166/221 (75.11%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWC-XXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 MSHRKFE PRHG+LGF PRKRAARH+GKVK+FPKDD ++ LTAF+GYKAGMTH+VRD+EKPGSK+HKKE EAVTIIE YV+T +GL++ TVWAQHLS+ RRR YKNW QYET+EGKKSI+A L+ IKK SVVRV+AHTQ+ K+K L QKKAH++EIQVNGG+I EKV++A FEK + V VF ++E+ID+ Sbjct: 1 MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLK-LTQKKAHVLEIQVNGGSIVEKVNFAVANFEKTVNVTGVFAENELIDV 220
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2) HSP 1 Score: 270.396 bits (690), Expect = 6.706e-72 Identity = 129/220 (58.64%), Postives = 166/220 (75.45%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 MSHRKF PRHGSLGFLPRKR++RHRGKVK+FPKDD SKP LTAFLGYKAGMTHIVR+V++PGSK++KKE EAVTI+ET YV+TPRGLR+ T++A+H+S+E +RRFYKNW +++ +GKK ++ +KKY V+RV+AHTQ+R + L+QKKAHLME+QVNGGT+AEK+D+A E+ +PV VF +DEMID+ Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDV 219
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4) HSP 1 Score: 266.159 bits (679), Expect = 1.265e-70 Identity = 136/219 (62.10%), Postives = 163/219 (74.43%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 MSHRK+E PRHG LGFLPRKRAA R +VKAFPKDD SKP LT+FLGYKAGMT IVRD+++PGSK HK+E EAVT+++T YV+TPRGLRSL TVWA+HLS+EV+RRFYKNW +Y D I+ +L +IKKYASVVRVL HTQIRK L QKKAHL EIQ+NGG+I+EKVD+A FEK + VD+VF+++EMID Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDGA--GIERELARIKKYASVVRVLVHTQIRKTP-LAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMID 216
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1) HSP 1 Score: 265.774 bits (678), Expect = 1.652e-70 Identity = 132/220 (60.00%), Postives = 166/220 (75.45%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 MSHRK+E PRHG LGFLPRKRAA RG+VKAFPKDD SKP LT+FLGYKAGMT IVRD+++PGSK HK+E EAV++++T Y++TPRGLRSL TVWA+HLS+E++RRFYKNW +G +I+ +L +IKKYASVVRVLAHTQ+RK L QKKAHL EIQ+NGG+++EKVD+A FEK + VD+VF+++EMID+ Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASIRGRVKAFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVSVVDTPPMVVVGVVGYIETPRGLRSLTTVWAEHLSDEIKRRFYKNWYKSKKKAFTQVPPPSTAQDG-AAIERELARIKKYASVVRVLAHTQVRKTP-LVQKKAHLAEIQLNGGSVSEKVDWAREHFEKTVSVDSVFEQNEMIDV 218
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 2.817e-70 Identity = 128/219 (58.45%), Postives = 161/219 (73.52%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 MSHRKF PRHG +GF P+KR+ +RG++KAFPKDD SKP LTAFLGYKAGMTHIVRDV+KPGSK++KKE EAVTI+ET YV TP+G R+L T+WA+HLSEE RRRFY NW +++ ++GKK I+A K+KKY S +RV+AHTQ++ ++ +QKKAHL+EIQVNGGTI +KVD+A EK + VD VF +DEMID Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR-RRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMID 218
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1) HSP 1 Score: 263.848 bits (673), Expect = 6.276e-70 Identity = 133/219 (60.73%), Postives = 164/219 (74.89%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 MSHRK+E PRHG LGFLPRKRAA RG+VK+FPKDD SKP LT+FLGYKAGMT IVRD+++PGSK HK+E EAVT+++T YV+TPRGLRSL TVWA+HLS+EV+RRFYKNW +Y + I+ +L +IKKYA+VVRVL HTQ+RK L QKKAHL EIQ+NGG+I+EKVD+A FEK + VD+VF+++EMID Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDKSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYA--QNGAEIERELARIKKYATVVRVLVHTQVRKTP-LVQKKAHLAEIQLNGGSISEKVDWAREHFEKTVSVDSVFEQNEMID 216
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2) HSP 1 Score: 263.848 bits (673), Expect = 6.276e-70 Identity = 127/219 (57.99%), Postives = 161/219 (73.52%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 MSHRKF PRHG +GF P+KR+ +RG++KAFPKDD SKP LTAFLGYKAGMTHIVRDV+KPGSK++KKE EAV+IIET Y+ TP+G R+L T+WA+HLSEE RRRFY NW +++ ++GKK I+A K+KKY S +RV+AHTQ++ ++ +QKKAHL+EIQ+NGGTI +KVD+A EK I VD VF +DEMID Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDASKPIHLTAFLGYKAGMTHIVRDVDKPGSKVNKKEVVEAVSIIETPPMVIAGVTGYIDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR-RRQKKAHLVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEMID 218 The following BLAST results are available for this feature:
BLAST of FC876398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876398 ID=FC876398; Name=FC876398; organism=Citrus clementina; type=EST; length=714bpback to top |