FC876398
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 1.071e-69 Identity = 130/220 (59.09%), Postives = 164/220 (74.55%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 MSHRK+E PRHG LGFLPRKRAA RG+VK+FPKDD +KP LT+FLGYKAGM+ IVRD+++PGSK HK+E EAVT+++T YV+TPRGLRSL TVWA+HLS+EV+RRFYKNW +Y E + +L +IKKYASVVRVL HTQ+RK L QKKAHL EIQ+NGG++++KVD+A FEK + VD+VF+++EMID+ Sbjct: 1 MSHRKYEAPRHGHLGFLPRKRAASVRGRVKSFPKDDQTKPVALTSFLGYKAGMSTIVRDLDRPGSKFHKREVVEAVTVVDTPPIVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYA--ENGAQVDRELARIKKYASVVRVLVHTQVRKTP-LSQKKAHLAEIQLNGGSVSDKVDWAKEHFEKTVAVDSVFEQNEMIDV 217
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3) HSP 1 Score: 255.758 bits (652), Expect = 1.709e-67 Identity = 127/219 (57.99%), Postives = 157/219 (71.69%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 MSHRKF PRHGS+ F P+KR+ARHRGKVKAFPKDD SKP LT F+GYKAGMTHIVR+ ++PGSK++KKE EAVT++ET Y++TP GLR+L VWAQHLSEE RRRFYKNW ++ D GKKSI+ K+ +Y V+RV+AH+QIR +K +QKKAH+MEIQ+NGG+I +KV +A EK I V VF +DEMID Sbjct: 1 MSHRKFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPVHLTCFIGYKAGMTHIVREADRPGSKINKKEVVEAVTVLETPPMIVVGAVGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIK-QRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMID 218
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3) HSP 1 Score: 248.825 bits (634), Expect = 2.089e-65 Identity = 120/220 (54.55%), Postives = 154/220 (70.00%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 MSHRKF PRHG LGFLP KR+ RHRGKVK +P+DDPS+P LTAFLGYKAGMTH +R+V +PG K+ K+E EAVTI+ET YV TPRGLRS T++A+HLS+E RRRFYK+W ++ +GKK +Q +KKY V+RV+ HTQ+ K+ +QKKAH+MEIQ+NGGT+AEKV +A EK +PV +VF + E+ID+ Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQM-KLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDV 219
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3) HSP 1 Score: 248.44 bits (633), Expect = 2.729e-65 Identity = 119/220 (54.09%), Postives = 155/220 (70.45%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 MSHRKF PRHG LGFLP KR+ RHRGKVK +P+DDPS+P LTAFLGYKAGMTH +R+V +PG K+ K+E EAVTI+ET YV TPRGLRS T++A+HLS+E RRRFYK+W ++ +GKK +Q +KKY V+RV+ HTQ+ K+ +QKKAH+ME+Q+NGGT+AEKV +A EK +PV +VF ++E+ID+ Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQM-KLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDV 219
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 9.147e-37 Identity = 98/226 (43.36%), Postives = 128/226 (56.64%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVR-DVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEG-----KKSI-QAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 MS RKF PRHGSL F PRKR+ R AFP DD S+P LT F+ YKAGMTH+VR + +K +E +AVT++E Y KT GLR L V A ++S+ V RR + N +Y + E K S+ ++++E IK+ A VRVL TQ +KGL KKAH+ EIQVNGG+I+EKV++A G EK I + VF +E ID Sbjct: 1 MSCRKFNAPRHGSLQFCPRKRSKTIRPAAGAFPADDRSQPVHLTGFMAYKAGMTHVVRTKTQVAKNKQLSREIMDAVTVLEAPPMVVYGIVGYEKTVTGLRRLPIVTAAYVSDGVLRRMFGN--------------RYASKESAGQFCKGSVCESRVEMIKERAHCVRVLVQTQPTLIKGLGLKKAHIAEIQVNGGSISEKVEWALGRLEKEIAIGEVFGVNENID 212
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_AERPE (50S ribosomal protein L3P OS=Aeropyrum pernix GN=rpl3p PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25 Identity = 83/223 (37.22%), Postives = 117/223 (52.47%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP-RGLRSLNTVWAQHLSE-EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 M RK PR GSLGF PRKRA+R +VK +P+ D KP L AFLGY+AGMTH+ ++PG KE VTI+ET Y P RG SL WAQ E E++RR ++TD+ KS++ +L+K A VR++A +Q + GL +KK L+EI+V G + + DYA I V+ VF++ +++D+ Sbjct: 1 MGARKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI-------------STLGSFDTDKMLKSLEERLDK----AEDVRLIAASQPKLAGGLSKKKPDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDV 205
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METMP (50S ribosomal protein L3P OS=Methanococcus maripaludis GN=rpl3p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.756e-23 Identity = 70/215 (32.56%), Postives = 107/215 (49.77%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P S +E VT++ET Y KT +GL++L VWA+ L ++ R+ E KK++ A L+ + + A+ VR + HT K G+ +KK ++EI++ G ++AE++ YA K + + VF+ E+ID Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNSSQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDSDLGRKL-----------------TLAKKEEKKTVDA-LDAVLEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIID 196
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METM7 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl3p PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23 Identity = 71/215 (33.02%), Postives = 108/215 (50.23%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P S + +E VT++ET Y KT +GL++L VWA+ L ++ R+ E KK+ A L+ + + A+ VRV+ HT K G+ +KK ++EI++ G ++AE++ YA K + + VF+ E+ID Sbjct: 4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDNDLGRKL-----------------TLVKKEEKKTADA-LDAVLEKATEVRVIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIID 196
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22 Identity = 70/215 (32.56%), Postives = 107/215 (49.77%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P S + +E VT++ET Y KT +GL++L VWA+ L ++ R+ E KK+ A L+ + + A+ VR + HT K G+ +KK ++EI++ G ++AE++ YA K + + VF+ E+ID Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDGDLGRKL-----------------TLAKKEEKKTADA-LDAVVEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAIGDVFEAGEIID 196
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22 Identity = 72/215 (33.49%), Postives = 107/215 (49.77%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P S + +E VT++ET Y KT +GL++L VWA+ +E+ R+ + E + +S+ A LEK +RV+ HT K G+ +KK ++EI+V G ++AEK+ YA K + ++ VF+ E ID Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL--------------TVTKKEEIKTVESLDAVLEKTVD----LRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFID 196 The following BLAST results are available for this feature:
BLAST of FC876398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876398 ID=FC876398; Name=FC876398; organism=Citrus clementina; type=EST; length=714bpback to top |