FC876398
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22 Identity = 72/215 (33.49%), Postives = 107/215 (49.77%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P S + +E VT++ET Y KT +GL++L VWA+ +E+ R+ + E + +S+ A LEK +RV+ HT K G+ +KK ++EI+V G ++AEK+ YA K + ++ VF+ E ID Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL--------------TVTKKEEIKTVESLDAVLEKTVD----LRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFID 196
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22 Identity = 70/215 (32.56%), Postives = 107/215 (49.77%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P S + +E VT++ET Y KT +GL++L VWA+ L ++ R+ E KK+ A L+ + + A+ VR + HT K G+ +KK ++EI++ G ++AE++ YA K + + VF+ E+ID Sbjct: 4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLQALTEVWAEQLDGDLGRKL-----------------TLVKKEEKKTADA-LDAVLEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIID 196
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.047e-20 Identity = 66/216 (30.56%), Postives = 104/216 (48.15%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 K+ PR GSL F PRKRA +++A+P+ D R+ F GYKAGMTH+V ++ S + +E VT+IET Y KT G++ VW+ +L + + RR + + ++ ++ AS VRV+ +TQ + G+ +K +ME ++ GG + E +DYA K I V VF + +ID+ Sbjct: 2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKNSPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRRL-------------------NLPKKEPDVEKLKAAVENGASEVRVVTYTQPYLITGVPKKVPDVMEHRI-GGNVEEALDYAISKLGKEISVSEVFDEGAIIDV 194
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.674e-20 Identity = 68/212 (32.08%), Postives = 106/212 (50.00%), Query Frame = 2 Query: 77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG-LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 PR GSL F PRKRA R +++++P++D RL AF YKAGM+H + P S +E +TI+E Y + R L +L VWA +L +E+ R+ + E +K+++ LE +K VRVL HT K+ L +KK ++EI++ G I E+++YA K + + VFQ+ E++D Sbjct: 8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNAGQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI-----------------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTN-PKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVD 197
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20 Identity = 67/223 (30.04%), Postives = 112/223 (50.22%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 M HRK PR GS G PRKRA+ +++P ++P +L F+GYK GM+HI +KP S + KE V++IET YV P+G + T + +SE++ + + + + D K+ ++ +L++I + + RVL TQ + + L +KK ++E+QV GG I +++Y K + V VF++ ++IDI Sbjct: 1 MGHRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEP-KLLGFVGYKVGMSHIFMIDDKPTSPNYGKEIYVPVSVIETPPVIPLAIRAYVMGPKGEPTTLTEYWGDISEDLLKLIQQR-----------KVTRLKID--KEKMKGKLDEINNKLNDILYLRVLIATQPKLVPSLGKKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDI 209
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20 Identity = 69/216 (31.94%), Postives = 95/216 (43.98%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 K PR GSL F PRKRA K K++P+ + L F GYK GMTH++ + S KE VTIIE Y K G +L +WA+ L ++ RR Y++ KK L + + LA+TQ M G+ +K LMEI+V GG IA++ +YA+G K I + V + DI Sbjct: 3 KINRPRRGSLAFSPRKRAQSPIPKYKSWPEHSGAPA--LLGFAGYKVGMTHVLMVDDHKDSPTEGKEIMVPVTIIEIPTMKVAALRVYTKDTYGKHALTEIWAEPLDSQLSRR-------------VTSPKNYDSTAAKKKYSDAL--AAGLVAEIYALAYTQPATMSGVPKKVPDLMEIKVAGGDIAKQYEYAFGLLGKEIRLSNVIETGAYADI 201
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20 Identity = 66/216 (30.56%), Postives = 101/216 (46.76%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPK-DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 + PR GS+ F PRKRAAR +VK++P+ D+P L A GYKAGMTH++ + S E VTI+E Y KT RGL++L V A +++RR+ Y+ + + I++ +E Y + VRV+ HT R + + +KK + E + G T EK +YA K + +F + +D Sbjct: 3 RHHQPRKGSVAFSPRKRAARETPRVKSWPQVDEPG----LLALAGYKAGMTHVMMVDNQKNSPTEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRKL------------TPPADDYDQEAAIEKIRSNME----YVADVRVIVHTNPR-LASVPKKKPEVFECGLGGKTPEEKFEYALEILGKDVRASEIFSEGAFVD 197
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_SULAC (50S ribosomal protein L3P OS=Sulfolobus acidocaldarius GN=rpl3p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.601e-19 Identity = 70/222 (31.53%), Postives = 104/222 (46.85%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG-LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQL-EKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 M HRK PR GS G PRKRA K +P + +P +L F+GYKAGMTH+ +KP S + KE VTI+E+ Y +G L L WA EE ++ K + D K + L +K + +R+L TQ + L +K+ ++EIQ+ GG+I ++++Y K IPV VF++ ++ DI Sbjct: 1 MGHRKLSSPRRGSAGLRPRKRADEILPTPKNWPLVNLKEP-KLLGFIGYKAGMTHVYMIDDKPTSPNYGKEVYTPVTIVESPPILGLALRAYHIDSKGELSVLVDYWANF--EEGSLKYLKR-----------KITSLKVDSSKMKEKLDLIQKNLNNITYMRLLVSTQPWLVPSLGKKRPEIVEIQIGGGSIQDQLNYGLSLLGKQIPVRDVFREGQLTDI 208
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.269e-18 Identity = 58/212 (27.36%), Postives = 101/212 (47.64%), Query Frame = 2 Query: 77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 PR GSL F PRKRA +++++ D+ + + F GYKAGMTH++ ++P S E VT++E Y G+R +WA++LS+++ R + + I+++++++ + +RVLAHT R + G+ +K +MEI V G ++ E++ A G + V +F E ID+ Sbjct: 7 PRRGSLAFSPRKRAKSEVPRIRSWVADERAG---MAGFAGYKAGMTHVIMIDDRPRSLTEGMEISVPVTVVEVPPMSVAALRVYEPYNGGIRPAGELWAENLSQDLERAI--------------TIPKARRGASLEDIESRVDELCE----IRVLAHTNPRLLTGVPKKVPDIMEIPVTGRSVEEQLKAAEGLLGSQVAVSNIFNVGEWIDV 197
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.269e-18 Identity = 63/214 (29.44%), Postives = 103/214 (48.13%), Query Frame = 2 Query: 77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKA--IPVDAVFQKDEMIDI 712 PR GS+GF PR RAA + ++P DD +P L F GYKAGM+H+V ++P S +E VT++ET Y TP G R L VW + E++ R + ++ + + I+ L+ + + VRV+ HT + + +K+ +ME +V GG+++++VD+A + V VF+ E D+ Sbjct: 7 PRKGSMGFSPRSRAASEVPRFNSWP-DDEGQP-GLQGFAGYKAGMSHVVAINDEPNSPREGQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLERSL--------------SVPEEQSGDIEGDIRTALD--EGALADVRVITHTVPGALSSVPKKEPDVMETRVGGGSLSDRVDFALDLVDDGGEHTVTDVFRAGEYTDV 202 The following BLAST results are available for this feature:
BLAST of FC876398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876398 ID=FC876398; Name=FC876398; organism=Citrus clementina; type=EST; length=714bpback to top |