FC876398
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.242e-17 Identity = 71/221 (32.13%), Postives = 99/221 (44.80%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFY---KNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 K PR GSL F PRKRA ++K +PKD R+ F GYKAGMTHI+ + PG KE VTI+E Y + GL + VW L++ V+RR KN+ +E K+ QLE + + VR+L HTQ +K +KK +ME + G + K +YA K I V + E++D+ Sbjct: 3 KVHRPRRGSLAFSPRKRARSVVPRIKKWPKD---SEVRMLGFAGYKAGMTHILMIDDSPG-LTKGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHELNDNVKRRIKTLPKNY----------------GEEDFKAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFEYAKERIGKEIRASEVLHEGELLDV 201
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_SULSO (50S ribosomal protein L3P OS=Sulfolobus solfataricus GN=rpl3p PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.242e-17 Identity = 67/230 (29.13%), Postives = 105/230 (45.65%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 M HRK PR GS G PRKR++ + +P+ + P +L F+GYK GMTH+ + P S + KE VT++E Y +G ++ T W+ + ++ RR + + DE KK +L+ IK + R+L TQ RK+ L +K L+EIQ+ GG ++DYA K I + VF++ ++ID+ Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRIHS------------ISSFLKDDESKKKFDERFNTKLDLIKSNLDRIVYFRLLVSTQPRKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDV 217
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.242e-17 Identity = 65/217 (29.95%), Postives = 104/217 (47.93%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWA-QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGK-KSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 + PR GS+ F PRKR AR +V +P+ D + L AF GYK GMTH+ + GS E VTI+E Y KT GL++L V A +L +E+ R+ +++ E K + ++ +++ I + +RVL HT+ K+ + +KK ++E + G ++ +K++YA K I VFQ+ E D Sbjct: 3 RHHQPRKGSVAFSPRKRVARETPRVSTWPELDEAG---LLAFAGYKVGMTHVTALDSRKGSPTENMELSVPVTILEAPPLVVLGIRAYTKTTYGLKTLTDVIANDNLDDELSRKI--------------SVPKFDDIEAKIEELRNKIDDIDE----IRVLIHTK-PKLTSVPKKKPEVLEFGLGGKSVEDKLEYAISILGKEITPQDVFQEGEYTD 197
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3) HSP 1 Score: 89.3521 bits (220), Expect = 2.119e-17 Identity = 60/195 (30.77%), Postives = 87/195 (44.62%), Query Frame = 2 Query: 77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFE 661 PR GS+GF PRKRA + ++P DD L F GYKAGMTH+V +K + ET VT++ET Y TP G + L VWA E + R DEG + + + + +RV+ HT G+ +K +ME +V GGT+A+++++A E Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIE 181
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.119e-17 Identity = 60/195 (30.77%), Postives = 87/195 (44.62%), Query Frame = 2 Query: 77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFE 661 PR GS+GF PRKRA + ++P DD L F GYKAGMTH+V +K + ET VT++ET Y TP G + L VWA E + R DEG + + + + +RV+ HT G+ +K +ME +V GGT+A+++++A E Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIE 181
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_SULIA (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl3p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17 Identity = 68/232 (29.31%), Postives = 108/232 (46.55%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWA----QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 M HRK PR GS G PRKR++ + +P+ + P +L F+GYK GM+H+ + P S + KE VT++E Y +G ++ T W+ Q L R R + ++ + DE KK + ++L+ IK + R+L TQ RK+ L +K L+EIQ+ GG ++DYA K I + VF++ ++ID+ Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIRSFSSFL--------------KNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDV 217
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_SULIY (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17 Identity = 66/230 (28.70%), Postives = 107/230 (46.52%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 M HRK PR GS G PRKR++ + +P+ + P +L F+GYK GM+H+ + P S + KE VT++E Y +G ++ T W+ + ++ RR + + DE KK + ++L+ IK + R+L TQ RK+ L +K L+EIQ+ GG ++DYA K I + VF++ ++ID+ Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDV 217
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_SULIN (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl3p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17 Identity = 66/230 (28.70%), Postives = 107/230 (46.52%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 M HRK PR GS G PRKR++ + +P+ + P +L F+GYK GM+H+ + P S + KE VT++E Y +G ++ T W+ + ++ RR + + DE KK + ++L+ IK + R+L TQ RK+ L +K L+EIQ+ GG ++DYA K I + VF++ ++ID+ Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDV 217
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_SULIM (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17 Identity = 66/230 (28.70%), Postives = 107/230 (46.52%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 M HRK PR GS G PRKR++ + +P+ + P +L F+GYK GM+H+ + P S + KE VT++E Y +G ++ T W+ + ++ RR + + DE KK + ++L+ IK + R+L TQ RK+ L +K L+EIQ+ GG ++DYA K I + VF++ ++ID+ Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------FSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDV 217
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_SULIL (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17 Identity = 66/230 (28.70%), Postives = 107/230 (46.52%), Query Frame = 2 Query: 53 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 M HRK PR GS G PRKR++ + +P+ + P +L F+GYK GM+H+ + P S + KE VT++E Y +G ++ T W+ + ++ RR + + DE KK + ++L+ IK + R+L TQ RK+ L +K L+EIQ+ GG ++DYA K I + VF++ ++ID+ Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDV 217 The following BLAST results are available for this feature:
BLAST of FC876398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876398 ID=FC876398; Name=FC876398; organism=Citrus clementina; type=EST; length=714bpback to top |