FC876398
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_NANEQ (50S ribosomal protein L3P OS=Nanoarchaeum equitans GN=rpl3p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14 Identity = 54/212 (25.47%), Postives = 100/212 (47.17%), Query Frame = 2 Query: 77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 PR GS+GF PRKRA+R ++K +PK + KP AF YK GMTH + ++ + + VT++E Y K L+ +++++ L + V R+ K Y +E K+ ++ + A V+++ TQ K+K +K + +I + G + +K++YA K + ++ VF++ + +D+ Sbjct: 9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKP---LAFAAYKVGMTHTILNI-------NGERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK-------------LKNYNFEEKKEQFLSKADN----ADEVKIIVSTQPWKIK--LKKTPEIFDIPIGGSDVNKKLEYALSLLGKELSINDVFKEGQYVDV 191
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14 Identity = 55/211 (26.07%), Postives = 94/211 (44.55%), Query Frame = 2 Query: 77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 P+ GSL F PRKRA H + +A+P + + +L +F GYK GMTH++ + S E VT+IET Y + G +++ WA L E++RR EG ++I +E+ + S +R + +T + + G+ +K +ME ++ + K +YA + V VF+ ++D Sbjct: 7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDIKNSLTQGMEISVPVTVIETPAIRVAAVRAYTEDSTGEKAIAEAWAADLDSELKRRI-------------PIPAAGNQAEGLENIGKLIEEGR--VSDIRAVTYTLPKSLTGVPKKVPDIMESGISAKDLGAKFEYAKSILGNLVNVTDVFKNGTVVD 200
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14 Identity = 58/211 (27.49%), Postives = 92/211 (43.60%), Query Frame = 2 Query: 77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 P+ GSL F PRKRA H + +A+P + + RL F GYK GMTH++ + S E VTIIET Y + G +++ VWA L E++RR E +I +E+ K S +R + +T + + G+ +K +ME ++ + K +YA + + VF+ +ID Sbjct: 7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPRLQGFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTIIETPAIRVAAIRAYAEDTAGEKAIAEVWATDLDPELKRRI-------------PVPKGDNMAETLGNIGKMIEEGK--VSDIRAVTYTLPKSLTGVPKKTPDIMESGISARDLNTKFEYAKSILGTLVSITDVFKTGTLID 200
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14 Identity = 56/221 (25.34%), Postives = 93/221 (42.08%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKY-----ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 K PR GSL + PRKR+ H + +++P+ D +L F GYK GMTH++ + S E VTIIET Y K G ++ W L +++ RR + A LEK++ A+ +R++ +T + G+ +K +ME V+G + K +YA + + VF +++D+ Sbjct: 3 KGHRPRRGSLAYSPRKRSQSHIPRFRSWPESDAEP--KLQGFAGYKVGMTHVIMIDDVKHSLTEGTEISVPVTIIETPAIRVAAIRAYGKDTYGEIAIAEAWTDVLDKDLSRRL--------------------KTAKNPDVNASLEKLETLVESGRANDIRLITYTLPSTLTGVPKKVPDVMETGVSGSDVKAKFEYAKTVLGTMVEISDVFDNGKIVDV 201
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_PICTO (50S ribosomal protein L3P OS=Picrophilus torridus GN=rpl3p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.863e-14 Identity = 51/191 (26.70%), Postives = 86/191 (45.03%), Query Frame = 2 Query: 74 HPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 646 H R GS+ + PR RA R +G ++++P+ + ++ AF GYK GMTHI + S + VT++E Y + GL ++ WA+++ ++V RR K + KK I+ K VR++ HT + + G+ K + EI++ G TI ++ YA Sbjct: 6 HSRRGSMAYYPRVRAKRIQGDIRSWPEIEGQ--TKVQAFAGYKVGMTHIQMVDYRKNSVTAGQVIMAPVTVVEVPPLTVMSIRYYARGDNGLEVISEEWAENIDKDVLRRINK------------------INRHKKGIEV------KDVDDVRLMVHTNPQLVSGVPSKTPEIFEIRIGGSTIENRIKYA 170
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14 Identity = 55/211 (26.07%), Postives = 94/211 (44.55%), Query Frame = 2 Query: 77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709 P+ GSL F PRKRA H + +A+P + + +L +F GYK GMTH++ + S E VT+IET Y + G +++ VWA L E++RR E ++I +E+ + S VR + +T + + G+ +K +ME ++ + K +Y+ + V VF+ ++D Sbjct: 7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTVIETPAIRVAAIRAYAEDSTGEKAIAEVWAADLDPELKRRI-------------PIPAAGNQAEALENIGKLIEEGR--VSDVRAVIYTLPKSLTGVPKKVPDIMESGISARDLGTKFEYSKTILGTLVSVTDVFKNGTLVD 200
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_HALWD (50S ribosomal protein L3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl3p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14 Identity = 54/213 (25.35%), Postives = 90/213 (42.25%), Query Frame = 2 Query: 77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKA--IPVDAVFQKDEMID 709 PR GS+GF PRKRA +++++ +D + + F GYKAGMT ++ ++ S E VT++ET Y TP G + L VW + + R +E D A+ I VR++ HT M+ + +K +ME +V GGT+ ++V++ + +F+ E +D Sbjct: 7 PRKGSMGFSPRKRAESEVPRIRSWASNDGAPGVQ--GFAGYKAGMTQVLMVNDEANSPREGMEEAVPVTVVETPPMRAVALRAYEDTPYGSKPLTEVWGREFDTSLERTL-----------DLPNEDTFEDDAAALRDDAETGDIDD----VRLITHTLPAGMRNIPKKTPDVMETRVGGGTLTDRVEFGLDLISDGGEHEISDIFRAGEYLD 202
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_PYRAB (50S ribosomal protein L3P OS=Pyrococcus abyssi GN=rpl3p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13 Identity = 62/222 (27.93%), Postives = 101/222 (45.50%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWA------QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 K PR GSL F PRKRA +++++PK+ R+ F GYKAGMTHI+ ++PG + KE VTIIET Y + GL + V ++S++ + R + + Y D+ ++ + LE + K +V V A + +KK +ME + G ++ EK +Y K + V V ++ E++D+ Sbjct: 3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKE---TEVRMLGFAGYKAGMTHILMIDDEPG-LTNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKF-TFYQLLKRRIATLPKNYTKDDFEQKL-GNLEDMIKEGEIVEVRALVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDV 218
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_THESM (50S ribosomal protein L3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl3p PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12 Identity = 60/218 (27.52%), Postives = 92/218 (42.20%), Query Frame = 2 Query: 65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQ--HLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712 + PR GSL + PRKRA +++ +P++ + R+ F GYKAGMTH++ + PG KE VTI+E Y + GL + V L +R + T+E + +LE + K VV + A + +KK +ME V G +I EK +Y K I V + Q+ E++DI Sbjct: 3 RISRPRRGSLAYSPRKRAKSIVPRIRKWPQE---QEVRMLGFAGYKAGMTHVLMIDDAPG-LTKGKEIFVPVTIVEAPPLMVYGIRAYKRGYFGLETATEVIVPDFKLENYPSKRAKNVTFYKLLERRIKTLPKNYTEEVFQQKLGELEDLVKTGEVVELRALVATQPWLARIKKKPEVMEYAVGGTSIEEKFNYIKEKLGKEIRVGEILQEGELLDI 216 The following BLAST results are available for this feature:
BLAST of FC876398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876398 ID=FC876398; Name=FC876398; organism=Citrus clementina; type=EST; length=714bpback to top |