FC876399

Overview
NameFC876399
Unique NameFC876399
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8669 contig Ccv1_Contig8669:60..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: ULA1_SCHPO (NEDD8-activating enzyme E1 regulatory subunit OS=Schizosaccharomyces pombe GN=ula1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.244e-33
Identity = 71/174 (40.80%), Postives = 109/174 (62.64%), Query Frame = 1
Query:  136 KYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRL 657
            KYDRQ+R+W  +GQ A+EK+ VCLL     G E LKNL+L GIGS  V+D + V+    G NF +     G+S+A+   + LQ+LN  V+ +++E  PEALI+ N  +FS+F++V+++ L E+ + +L+   R   + L+   S G  G +RIS  E+T  +S+P+    DLRL
Sbjct:    9 KYDRQVRLWKAEGQNAIEKSHVCLLYANTVGCEALKNLILPGIGSFAVVDDTSVDFSMDGMNFFIQYDQEGKSRARCTASLLQQLNPNVEMEYLEMSPEALIDKNIEYFSKFSVVLSSNLKEKPLFRLEEYLRSHKIPLLHFNSVGFAGILRISTHEYTTTQSQPE-LPQDLRL 181          

HSP 2 Score: 21.557 bits (44), Expect = 9.244e-33
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 3
Query:  654 IKYPWPELXN 683
            +K PWPEL N
Sbjct:  181 LKNPWPELIN 190          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: ULA1_CAEEL (NEDD8-activating enzyme E1 regulatory subunit OS=Caenorhabditis elegans GN=ula-1 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.847e-29
Identity = 67/179 (37.43%), Postives = 103/179 (57.54%), Query Frame = 1
Query:  124 EPKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLN 660
            +P T+YDRQ+R+WGE+GQA++   S C+L      +E LK+LVL G+ S  V+D +KVE  D+G NF L    +G+S+A++    L ELN +V      + P AL   +    + F++VVA    EE      ++     V  I  +++GL G +RI +KEHT+  S  ++   DLRL+
Sbjct:    5 DPSTRYDRQVRLWGEEGQASIGSTSACVLGSDSLATEILKSLVLAGVQSFYVVDDAKVEQADIGQNFFLHADDIGRSRAEATLEKLTELNPSVSGSASSQPPTALAMEDVEKLTTFSVVVAANQNEEIDTTFAKVLYNIRVPFICIKTFGLIGTIRICIKEHTIANSHEENPRPDLRLD 183          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: RHC31_YEAST (DNA damage tolerance protein RHC31 OS=Saccharomyces cerevisiae GN=AOS1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 63/163 (38.65%), Postives = 94/163 (57.67%), Query Frame = 1
Query:  139 YDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESK 627
            YDRQ+R+WG   QA +  A V L+N G  GSE  K++VL GIG +T++DG  V   DLG+ F +    VGQ K  +    +Q+LN  ++  F +   + L E +  FF QF LVVAT++  ++ IK++ + R+ N+ L  A S GL  +V I + E    + K
Sbjct:   16 YDRQIRLWGMTAQANMRSAKVLLINLGAIGSEITKSIVLSGIGHLTILDGHMVTEEDLGSQFFIGSEDVGQWKIDATKERIQDLNPRIELNFDK---QDLQEKDEEFFQQFDLVVATEMQIDEAIKINTLTRKLNIPLYVAGSNGLFAYVFIDLIEFISEDEK 175          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: SAE1_RAT (SUMO-activating enzyme subunit 1 OS=Rattus norvegicus GN=Sae1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.780e-20
Identity = 55/172 (31.98%), Postives = 90/172 (52.33%), Query Frame = 1
Query:  124 EPKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKF----IEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESK 627
            E   +YDRQ+R+WG + Q  L  + V ++     G+E  KNL+L G+  +T++D  +V   DLG  F++    VGQ++A++     Q LN  V  K     IE+ PE+       FF++F  V  T   ++ +IK+D+IC   ++       +G  G+   ++ EH  VE K
Sbjct:   17 EEAAQYDRQIRLWGLEAQKRLRASRVLIVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDLGAQFLIRTGSVGQNRAEASLERAQNLNPMVDVKVDTEDIEKKPES-------FFTEFDAVCLTCCSKDVIIKVDQICHRNSIKFFTGDVFGYHGYTFANLGEHEFVEEK 181          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: RAD31_SCHPO (DNA damage tolerance protein rad31 OS=Schizosaccharomyces pombe GN=rad31 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 55/163 (33.74%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  121 AEPKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH 609
            AE    YDRQ+R+WG   Q AL+++ V L+   P  +E  KNLVL GIG + V+D   V   D+   F ++ S +GQ +A      L ELN  V+   I+     + E++    S+F++V+ATQL  E+  +++ + R  N        +GL GF    +  H
Sbjct:    8 AEEIALYDRQIRLWGFNAQQALKQSRVLLITASPLANEIAKNLVLSGIGKLCVLDSMTVYEKDVEEQFFIEASDIGQLRANVFKKKLHELNPLVE---IDTDTSLISEIDEGKISKFSMVIATQLDYEEFCRINELTRICNASFYATSCFGLYGFAFCDLINH 167          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: SAE1_BOVIN (SUMO-activating enzyme subunit 1 OS=Bos taurus GN=SAE1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.861e-19
Identity = 54/172 (31.40%), Postives = 89/172 (51.74%), Query Frame = 1
Query:  124 EPKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKF----IEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESK 627
            E   +YDRQ+R+WG + Q  L  + V L+     G+E  KNL+L G+  +T++D  +V   D G  F++    VG+++A++     Q LN  V  K     IE+ PE+       FF+QF  V  T    + ++K+D+IC + ++       +G  G+   ++ EH  VE K
Sbjct:   14 EEAAQYDRQIRLWGLEAQKRLRASQVLLVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTENIEKKPES-------FFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEK 178          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: SAE1_XENTR (SUMO-activating enzyme subunit 1 OS=Xenopus tropicalis GN=sae1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 49/168 (29.17%), Postives = 88/168 (52.38%), Query Frame = 1
Query:  124 EPKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESK 627
            E   +YDRQ+R+WG + Q  L  + V L+     G+E  KNL+L G+ ++T++D  +V   D    F++    +GQ++A++     + LN  V    +E   E + + +  FF+QF +V  T    + ++++D IC + N+       +G  G++   + EH  VE K
Sbjct:   12 EEAAQYDRQIRLWGLEAQKRLRTSRVLLVGMRGLGAEVAKNLILAGVKALTLLDHEQVSSEDSRAQFLIPSGSLGQNRAEASLNRARNLNPMVS---VEADTENINQKSDDFFTQFDVVCLTSCSRDLLVRVDHICHKHNIKFFTGDVFGYHGYMFADLGEHEFVEEK 176          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: SAE1_PONAB (SUMO-activating enzyme subunit 1 OS=Pongo abelii GN=SAE1 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 54/172 (31.40%), Postives = 89/172 (51.74%), Query Frame = 1
Query:  124 EPKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKF----IEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESK 627
            E   +YDRQ+R+WG + Q  L  + V L+     G+E  KNL+L G+  +T++D  +V   D G  F++    VG+++A++     Q LN  V  K     IE+ PE+       FF+QF  V  T    + ++K+D+IC + ++       +G  G+   ++ EH  VE K
Sbjct:   14 EEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPES-------FFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEK 178          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: SAE1_HUMAN (SUMO-activating enzyme subunit 1 OS=Homo sapiens GN=SAE1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 54/172 (31.40%), Postives = 89/172 (51.74%), Query Frame = 1
Query:  124 EPKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKF----IEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESK 627
            E   +YDRQ+R+WG + Q  L  + V L+     G+E  KNL+L G+  +T++D  +V   D G  F++    VG+++A++     Q LN  V  K     IE+ PE+       FF+QF  V  T    + ++K+D+IC + ++       +G  G+   ++ EH  VE K
Sbjct:   14 EEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPES-------FFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEK 178          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: SAE1_MOUSE (SUMO-activating enzyme subunit 1 OS=Mus musculus GN=Sae1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18
Identity = 52/172 (30.23%), Postives = 88/172 (51.16%), Query Frame = 1
Query:  124 EPKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKF----IEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESK 627
            E   +YDRQ+R+WG + Q  L  + V ++     G+E  KNL+L G+  +T++D  +V   D G  F++    VG+++A++     Q LN  V  K     +E+ PE+       FF++F  V  T    + +IK+D+IC   ++       +G  G+   ++ EH  VE K
Sbjct:   18 EEAAQYDRQIRLWGLEAQKRLRASRVLIVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDPGAQFLIQTGSVGRNRAEASLERAQNLNPMVDVKVDTEDVEKKPES-------FFTKFDAVCLTCCSRDVIIKVDQICHRNSIKFFTGDVFGYHGYTFANLGEHEFVEEK 182          
The following BLAST results are available for this feature:
BLAST of FC876399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ULA1_SCHPO9.244e-3340.80NEDD8-activating enzyme E1 regulatory subunit OS=S... [more]
ULA1_CAEEL1.847e-2937.43NEDD8-activating enzyme E1 regulatory subunit OS=C... [more]
RHC31_YEAST2.337e-2438.65DNA damage tolerance protein RHC31 OS=Saccharomyce... [more]
SAE1_RAT7.780e-2031.98SUMO-activating enzyme subunit 1 OS=Rattus norvegi... [more]
RAD31_SCHPO2.956e-1933.74DNA damage tolerance protein rad31 OS=Schizosaccha... [more]
SAE1_BOVIN3.861e-1931.40SUMO-activating enzyme subunit 1 OS=Bos taurus GN=... [more]
SAE1_XENTR5.043e-1929.17SUMO-activating enzyme subunit 1 OS=Xenopus tropic... [more]
SAE1_PONAB6.586e-1931.40SUMO-activating enzyme subunit 1 OS=Pongo abelii G... [more]
SAE1_HUMAN6.586e-1931.40SUMO-activating enzyme subunit 1 OS=Homo sapiens G... [more]
SAE1_MOUSE1.916e-1830.23SUMO-activating enzyme subunit 1 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionC32004C10EF DevOvary1 Citrus clementina cDNA clone C32004C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876399 ID=FC876399; Name=FC876399; organism=Citrus clementina; type=EST; length=713bp
GGCGTAGTTAAGAAGCACTTGAAAGAGCACGGAGAGCTTCTCATTTTACT
GCGGCCACGAAATAGAAAAACGAAATTTTAAATAAAGAAAAAAGAAAAAA
ACACACGAACAGCAGCAATGGCGGAACCAAAAACCAAATACGACCGCCAG
CTCAGGATCTGGGGTGAGCAAGGGCAAGCAGCTCTTGAAAAGGCAAGTGT
ATGCTTGCTCAACTGTGGTCCTACAGGTTCCGAGACTTTGAAAAATCTGG
TTCTTGGCGGGATTGGAAGCATTACAGTAATTGATGGGTCTAAAGTTGAA
GTGGGTGACCTTGGAAACAATTTTATGTTGGATGAGTCATGTGTTGGGCA
ATCAAAAGCCAAGTCTGTGTGTGCATTTCTTCAAGAGCTCAACGATGCTG
TTAAAGCCAAGTTTATTGAGGAGTATCCTGAGGCACTGATTGAAATGAAC
CCTCCCTTCTTCTCTCAGTTTACTTTGGTTGTGGCCACACAGCTGGGAGA
AGAAAAAATGATAAAGCTTGATAGAATCTGTAGAGAGGCAAATGTGATGT
TGATTTTTGCTCGCTCCTATGGCCTCACTGGGTTTGTTCGAATCAGTGTG
AAGGAACATACAGTGGTTGAGTCAAAGCCTGATCATTTTCTGGATGACCT
TCGATTAAATACCCATGGCCTGAGCTAANGAATTTGCAGAACATTCGATT
TGATGTCCTGATC
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