FC876399

Overview
NameFC876399
Unique NameFC876399
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8669 contig Ccv1_Contig8669:60..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: UBA1_MOUSE (Ubiquitin-like modifier-activating enzyme 1 OS=Mus musculus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 45/148 (30.41%), Postives = 72/148 (48.65%), Query Frame = 1
Query:  139 YDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 582
            Y RQL + G +    L+ +SV +      G E  KN++LGG+ ++T+ D    +  DL + F L E  +G+++A+     L ELN  V    +  Y   L+E    F S F +VV T    E  +++   C    + L+ A + GL G
Sbjct:   55 YSRQLYVLGHEAMKMLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTTQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVP---VTAYTGPLVE---DFLSSFQVVVLTNSPLEAQLRVGEFCHSRGIKLVVADTRGLFG 196          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: UBA1_BOVIN (Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 45/148 (30.41%), Postives = 72/148 (48.65%), Query Frame = 1
Query:  139 YDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 582
            Y RQL + G +    L+ +SV +      G E  KN++LGG+ ++T+ D    +  DL + F L E  +G+++A+     L ELN  V    +  Y   L+E    F S F +VV T    E  +++   C    + L+ A + GL G
Sbjct:   55 YSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVP---VSAYTGPLVE---DFLSDFQVVVLTNSPLEDQLRVGEFCHSHGIKLVVADTRGLFG 196          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: UBA1_HUMAN (Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 45/148 (30.41%), Postives = 72/148 (48.65%), Query Frame = 1
Query:  139 YDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 582
            Y RQL + G +    L+ +SV +      G E  KN++LGG+ ++T+ D    +  DL + F L E  +G+++A+     L ELN  V    +  Y   L+E    F S F +VV T    E  +++   C    + L+ A + GL G
Sbjct:   55 YSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVP---VTAYTGPLVE---DFLSGFQVVVLTNTPLEDQLRVGEFCHNRGIKLVVADTRGLFG 196          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: UBA1_RABIT (Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 45/148 (30.41%), Postives = 72/148 (48.65%), Query Frame = 1
Query:  139 YDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 582
            Y RQL + G +    L+ +SV +      G E  KN++LGG+ ++T+ D    +  DL + F L E  +G+++A+     L ELN  V    +  Y   L+E    F S F +VV T    E  +++   C    + L+ A + GL G
Sbjct:   55 YSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVP---VTAYTGPLVE---DFLSGFQVVVLTNSPLEDQLRVGEFCHSRGIKLVVADTRGLFG 196          
BLAST of FC876399 vs. ExPASy Swiss-Prot
Match: UBA1Y_MOUSE (Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 46/148 (31.08%), Postives = 72/148 (48.65%), Query Frame = 1
Query:  139 YDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGQSKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 582
            Y RQL + G +    L+ +SV +      G E  KN++LGG+ ++T+ D    +  DL + F L E  +G+++A+     L ELN  V    +  Y   LIE    F S F +VV T    E  +++   C    + L+ A + GL G
Sbjct:   54 YSRQLYVLGHEAMKHLQASSVLISGLQGLGVEIAKNIILGGVKAVTLHDQGIAQWADLSSQFCLREEDIGKNRAEISQPRLAELNSYVP---VFAYTGPLIE---EFLSGFQVVVLTNTPLEYQLQVGEFCHSHGIKLVVADTRGLVG 195          
The following BLAST results are available for this feature:
BLAST of FC876399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
UBA1_MOUSE4.571e-1230.41Ubiquitin-like modifier-activating enzyme 1 OS=Mus... [more]
UBA1_BOVIN4.571e-1230.41Ubiquitin-like modifier-activating enzyme 1 OS=Bos... [more]
UBA1_HUMAN5.970e-1230.41Ubiquitin-like modifier-activating enzyme 1 OS=Hom... [more]
UBA1_RABIT7.798e-1230.41Ubiquitin-like modifier-activating enzyme 1 OS=Ory... [more]
UBA1Y_MOUSE1.737e-1131.08Ubiquitin-like modifier-activating enzyme 1 Y OS=M... [more]

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Properties
Property NameValue
Genbank descriptionC32004C10EF DevOvary1 Citrus clementina cDNA clone C32004C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876399 ID=FC876399; Name=FC876399; organism=Citrus clementina; type=EST; length=713bp
GGCGTAGTTAAGAAGCACTTGAAAGAGCACGGAGAGCTTCTCATTTTACT
GCGGCCACGAAATAGAAAAACGAAATTTTAAATAAAGAAAAAAGAAAAAA
ACACACGAACAGCAGCAATGGCGGAACCAAAAACCAAATACGACCGCCAG
CTCAGGATCTGGGGTGAGCAAGGGCAAGCAGCTCTTGAAAAGGCAAGTGT
ATGCTTGCTCAACTGTGGTCCTACAGGTTCCGAGACTTTGAAAAATCTGG
TTCTTGGCGGGATTGGAAGCATTACAGTAATTGATGGGTCTAAAGTTGAA
GTGGGTGACCTTGGAAACAATTTTATGTTGGATGAGTCATGTGTTGGGCA
ATCAAAAGCCAAGTCTGTGTGTGCATTTCTTCAAGAGCTCAACGATGCTG
TTAAAGCCAAGTTTATTGAGGAGTATCCTGAGGCACTGATTGAAATGAAC
CCTCCCTTCTTCTCTCAGTTTACTTTGGTTGTGGCCACACAGCTGGGAGA
AGAAAAAATGATAAAGCTTGATAGAATCTGTAGAGAGGCAAATGTGATGT
TGATTTTTGCTCGCTCCTATGGCCTCACTGGGTTTGTTCGAATCAGTGTG
AAGGAACATACAGTGGTTGAGTCAAAGCCTGATCATTTTCTGGATGACCT
TCGATTAAATACCCATGGCCTGAGCTAANGAATTTGCAGAACATTCGATT
TGATGTCCTGATC
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