FC876402

Overview
NameFC876402
Unique NameFC876402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length593
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10349 contig Ccv1_Contig10349:1..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876402 vs. ExPASy Swiss-Prot
Match: SCPB_NANOT (Carboxypeptidase S1 homolog B OS=Nannizzia otae (strain CBS 113480) GN=SCPB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.740e-11
Identity = 30/90 (33.33%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:  208 IGVGENDNVQLFYYFIESERSPEDDPLVLWLSGGPGCSGFWALAYQLGPLSFDYENSRENSPKLLLNPYSWTKVASIIFIDAPAGTGFSY 477
            +GV ++  +  F++F E+ + PE+ PL +W++GGPG S  + +  + GP    + N   NS +  LNP+SW    +++++D P   G SY
Sbjct:   74 LGVEQDYPINTFFWFFEARKDPENAPLSIWMNGGPGSSSMFGMMTENGPC---FVNPDSNSTR--LNPHSWNNEVNMLYLDQPVQVGLSY 158
[Close]
BLAST of FC876402 vs. ExPASy Swiss-Prot
Match: SPCA_TRIRU (Carboxypeptidase S1 homolog A OS=Trichophyton rubrum GN=SCPA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 38/119 (31.93%), Postives = 59/119 (49.58%), Query Frame = 1 
Query:  169 FDGDLPFKLETGYIGVGENDNVQLFYYFIESERSPEDDPLVLWLSGGPGCSGFWALAYQLGPLSFDYENSRENSPKLLLNPYSWTKVASIIFIDAPAGTGFSY--VKNWQGFVMNDTLS 519
            F G +    +    GV  N ++  F++F E+   P++ PL +WL+GGPG S    L  + GP   +     E+S     N +SW    ++++ID P   GFSY    N     +NDT+S
Sbjct:   59 FTGHVHLPPDNDDFGVYRNYSINTFFWFFEAREDPKNAPLSIWLNGGPGSSSMIGLFQENGPCWVN-----EDSKSTTNNSFSWNNKVNMLYIDQPNQVGFSYDVPTNITYSTINDTIS 172
The following BLAST results are available for this feature:
BLAST of FC876402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
SCPB_NANOT2.740e-1133.33Carboxypeptidase S1 homolog B OS=Nannizzia otae (s... [more]
SPCA_TRIRU6.104e-1131.93Carboxypeptidase S1 homolog A OS=Trichophyton rubr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004D01EF DevOvary1 Citrus clementina cDNA clone C32004D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876402 ID=FC876402; Name=FC876402; organism=Citrus clementina; type=EST; length=593bp
GATCGCAATTCCATTAACACTGTTCTCCTCTCAATTATTGAGCGTAGCTA
AACCTGAAAGTGGATCTTCAAATCATTGAGCATGGCAGCATTGCAATTAT
TTTTTCTCTTTGTGGCCCTTAATGTGGTCCTCAGTTCATCACGGCAAATC
ATCACGACCCTGCCGGGCTTTGATGGTGATCTTCCCTTCAAACTCGAAAC
TGGGTATATTGGGGTGGGAGAGAATGATAATGTGCAGCTGTTTTACTACT
TCATTGAATCCGAGCGGAGTCCTGAAGATGACCCTCTTGTGCTTTGGCTC
TCCGGAGGCCCTGGTTGCTCTGGATTTTGGGCCCTTGCGTATCAACTTGG
TCCATTGTCATTTGACTACGAAAATTCTAGAGAAAATTCCCCAAAGTTGT
TGTTGAATCCATACTCATGGACAAAGGTTGCCAGTATTATATTCATAGAT
GCACCAGCTGGCACCGGATTCTCATATGTCAAAAATTGGCAAGGATTCGT
TATGAATGATACACTTTCAGCAGTGCAAACGTATTTTTTTCTAAGAAAGT
GGCTTATAGCTCATCCCAGTTTCCTCGCGAATCCACTCTATAT
back to top