FC876403

Overview
NameFC876403
Unique NameFC876403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:10..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_BURM9 (Chaperone protein dnaK OS=Burkholderia mallei (strain NCTC 10229) GN=dnaK PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.376e-38
Identity = 88/168 (52.38%), Postives = 111/168 (66.07%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTD-TERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV + + ++V++I N +G RTTPS + + D  E L+G  AK Q   NP NT+F  KRLIGRRF +  VQ D+ L P+ +I   AD     V   GE+   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:    2 GKIIGIDLGTTNSCVAIMEGNQVKVIENSEGARTTPSIIAYMDDNEVLVGAPAKRQSVTNPKNTLFAVKRLIGRRFEEKEVQKDIGLMPYAIIK--ADNGDAWVEAHGEK--LAPPQVSAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_BURM7 (Chaperone protein dnaK OS=Burkholderia mallei (strain NCTC 10247) GN=dnaK PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.376e-38
Identity = 88/168 (52.38%), Postives = 111/168 (66.07%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTD-TERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV + + ++V++I N +G RTTPS + + D  E L+G  AK Q   NP NT+F  KRLIGRRF +  VQ D+ L P+ +I   AD     V   GE+   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:    2 GKIIGIDLGTTNSCVAIMEGNQVKVIENSEGARTTPSIIAYMDDNEVLVGAPAKRQSVTNPKNTLFAVKRLIGRRFEEKEVQKDIGLMPYAIIK--ADNGDAWVEAHGEK--LAPPQVSAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_XANC5 (Chaperone protein dnaK OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.327e-38
Identity = 84/168 (50.00%), Postives = 111/168 (66.07%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV +    +  +I N +G+RTTPS V +T D E L+G +AK Q   NP NT +  KRLIGR+F+D  VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:    2 GKIIGIDLGTTNSCVSIMDGGKARVIENSEGDRTTPSIVAYTKDGEVLVGASAKRQAVTNPKNTFYAVKRLIGRKFTDGEVQKDISHVPYGILAHDNGDAWVQTS---DAKRMAPQEISARVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_RICRS (Chaperone protein dnaK OS=Rickettsia rickettsii (strain Sheila Smith) GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.327e-38
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV V +    ++I N +G RTTPS + F + E+L+G +AK Q   NP NT++  KRLIGR F D  V+ D  + P+ ++        +    + +  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    2 GKVIGIDLGTTNSCVAVMEGKEPKVIENAEGERTTPSIIAFANGEKLVGQSAKRQAVTNPRNTIYAVKRLIGRNFIDPMVRKDQGIVPYNIVKADNGDAWV----EADNNKYSPSQISAFILQKMKETAENYLGDKVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_RICRO (Chaperone protein dnaK OS=Rickettsia rickettsii (strain Iowa) GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.327e-38
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV V +    ++I N +G RTTPS + F + E+L+G +AK Q   NP NT++  KRLIGR F D  V+ D  + P+ ++        +    + +  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    2 GKVIGIDLGTTNSCVAVMEGKEPKVIENAEGERTTPSIIAFANGEKLVGQSAKRQAVTNPRNTIYAVKRLIGRNFIDPMVRKDQGIVPYNIVKADNGDAWV----EADNNKYSPSQISAFILQKMKETAENYLGDKVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_RICCN (Chaperone protein dnaK OS=Rickettsia conorii GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.327e-38
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV V +    ++I N +G RTTPS + F + E+L+G +AK Q   NP NT++  KRLIGR F D  V+ D  + P+ ++        +    + +  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    2 GKVIGIDLGTTNSCVAVMEGKEPKVIENAEGERTTPSIIAFANGEKLVGQSAKRQAVTNPRNTIYAVKRLIGRNFIDPMVRKDQGIVPYNIVKADNGDAWV----EADNNKYSPSQISAFILQKMKETAENYLGDKVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_RICAE (Chaperone protein dnaK OS=Rickettsia africae (strain ESF-5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.327e-38
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV V +    ++I N +G RTTPS + F + E+L+G +AK Q   NP NT++  KRLIGR F D  V+ D  + P+ ++        +    + +  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    2 GKVIGIDLGTTNSCVAVMEGKEPKVIENAEGERTTPSIIAFANGEKLVGQSAKRQAVTNPRNTIYAVKRLIGRNFIDPMVRKDQGIVPYNIVKADNGDAWV----EADNNKYSPSQISAFILQKMKETAENYLGDKVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_PSEU2 (Chaperone protein dnaK OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.327e-38
Identity = 82/168 (48.81%), Postives = 113/168 (67.26%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV + ++  V++I N +G RTTPS + +  D E L+G +AK Q   NP NT++  KRLIGR+F +  VQ D+++ P+K++        + VN     ++ A  +IS+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:    2 GRIIGIDLGTTNSCVSILENGNVKVIENAEGTRTTPSIIAYANDGEILVGQSAKRQAVTNPHNTLYAVKRLIGRKFEEDVVQKDIQMVPYKIVKADNGDAWVEVN----GQKMAPPQISAEILKKMKKTAEDYLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_PSESM (Chaperone protein dnaK OS=Pseudomonas syringae pv. tomato GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.327e-38
Identity = 82/168 (48.81%), Postives = 113/168 (67.26%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV + ++  V++I N +G RTTPS + +  D E L+G +AK Q   NP NT++  KRLIGR+F +  VQ D+++ P+K++        + VN     ++ A  +IS+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:    2 GRIIGIDLGTTNSCVSILENGNVKVIDNAEGTRTTPSIIAYANDGEILVGQSAKRQAVTNPHNTLYAVKRLIGRKFDEQVVQKDIQMVPYKIVKADNGDAWVEVN----GQKMAPPQISAEILKKMKKTAEDYLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_BURM1 (Chaperone protein dnaK OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.327e-38
Identity = 88/168 (52.38%), Postives = 111/168 (66.07%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTD-TERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV V + ++V++I N +G RTTPS + + D  E L+G  AK Q   NP NT+F  KRLIGRRF +  VQ D+ L P+ +I   AD     V   G++   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:    2 GKIIGIDLGTTNSCVAVMEGNQVKVIENSEGARTTPSIIAYMDDNEVLVGAPAKRQSVTNPKNTLFAVKRLIGRRFEEKEVQKDIGLMPYSIIK--ADNGDAWVEAHGQK--LAPPQVSAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
The following BLAST results are available for this feature:
BLAST of FC876403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_BURM96.376e-3852.38Chaperone protein dnaK OS=Burkholderia mallei (str... [more]
DNAK_BURM76.376e-3852.38Chaperone protein dnaK OS=Burkholderia mallei (str... [more]
DNAK_XANC58.327e-3850.00Chaperone protein dnaK OS=Xanthomonas campestris p... [more]
DNAK_RICRS8.327e-3846.71Chaperone protein dnaK OS=Rickettsia rickettsii (s... [more]
DNAK_RICRO8.327e-3846.71Chaperone protein dnaK OS=Rickettsia rickettsii (s... [more]
DNAK_RICCN8.327e-3846.71Chaperone protein dnaK OS=Rickettsia conorii GN=dn... [more]
DNAK_RICAE8.327e-3846.71Chaperone protein dnaK OS=Rickettsia africae (stra... [more]
DNAK_PSEU28.327e-3848.81Chaperone protein dnaK OS=Pseudomonas syringae pv.... [more]
DNAK_PSESM8.327e-3848.81Chaperone protein dnaK OS=Pseudomonas syringae pv.... [more]
DNAK_BURM18.327e-3852.38Chaperone protein dnaK OS=Burkholderia multivorans... [more]

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Properties
Property NameValue
Genbank descriptionC32004D02EF DevOvary1 Citrus clementina cDNA clone C32004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876403 ID=FC876403; Name=FC876403; organism=Citrus clementina; type=EST; length=620bp
ATCAAGTTTTTTATTTTTTAGATTTGAGATCTATTTTTGTTTTTCTTCGC
TGTCAAAGCAAACTACTTTATTCTCCTTTTCCTTGCTTGAGTTTTGATAA
TGGCCGGAAAAGGAGAGGGACCAGCGATCGGTATCGATTTGGGGACGACG
TACTCCTGCGTCGGAGTCTGGCAGCATGACAGAGTCGAGATTATCGCCAA
TGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGGTTCACCGACACGG
AGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCACCATGAACCCCACG
AACACCGTCTTTGATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGC
ATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAGGTGATTGCTGGAC
CTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAG
TTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGAT
TGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCAGTCGTTACTGTCC
CTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATGCCGGTGTC
ATTGCTGGGCTTAATGTGAT
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