FC876404

Overview
NameFC876404
Unique NameFC876404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10302 contig Ccv1_Contig10302:7..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: C99A2_ORYSJ (Cytochrome P450 99A2 OS=Oryza sativa subsp. japonica GN=CYP99A2 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 54/164 (32.93%), Postives = 78/164 (47.56%), Query Frame = 3
Query:  156 PPGPKPWPIVGNLPHL-GPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRALASA--------GTEPVNLAQRLNLCVVNALGRVMLG 620
            PPGP   P+VG L HL    P  ++  LA  +GP+M+LR+G              + L+  D  F++RP    ++   Y+  D+ F PYG  WRMLRK+ +V L S K +     VR +E   L R + +A        G +PV LA+ L  C      +   G
Sbjct:   60 PPGPWNLPLVGGLLHLLRSHPQVALRELASKYGPVMFLRMGQIDTVVVSSPAAAQEVLRDKDVMFASRPSLLVSEIFCYDNLDVGFAPYGAYWRMLRKLCTVELLSTKVVRQLAPVRNDETLTLVRNIKAASSGHGGGGGKKPVTLARLLTTCTNTITAKAAFG 223          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: C80B2_ESCCA ((S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS=Eschscholzia californica GN=CYP80B2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 48/153 (31.37%), Postives = 72/153 (47.06%), Query Frame = 3
Query:  156 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRALASAGTEPVNLAQRLNLCVVNALGRVM 614
            PPGPKPWPIVGNL  LG  PH   A LA+T+G +  L++G              + LK HD   S R      +   +    IV+      W+ LRK+    LF+ K ++   HVR+++   +   L     E V + + +   +VN  G ++
Sbjct:   30 PPGPKPWPIVGNLLQLGEKPHAQFAELAQTYGDIFTLKMGTETVVVASTSSAASEILKTHDRILSARYVFQSFRVKGHVENSIVWSDCTETWKNLRKVCRTELFTQKMIESQAHVREKKCEEMVEYLMKKQGEEVKIVEVIFGTLVNIFGNLI 182          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: C80B1_ESCCA ((S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (Fragment) OS=Eschscholzia californica GN=CYP80B1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 48/153 (31.37%), Postives = 72/153 (47.06%), Query Frame = 3
Query:  156 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRALASAGTEPVNLAQRLNLCVVNALGRVM 614
            PPGPKPWPIVGNL  LG  PH   A LA+T+G +  L++G              + LK HD   S R      +   +    IV+      W+ LRK+    LF+ K ++   HVR+++   +   L     E V + + +   +VN  G ++
Sbjct:   29 PPGPKPWPIVGNLLQLGEKPHAQFAELAQTYGDIFTLKMGTETVVVASTSSAASEILKTHDRILSARYVFQSFRVKGHVENSIVWSDCTETWKNLRKVCRTELFTQKMIESQAHVREKKCEEMVEYLMKKQGEEVKIVEVIFGTLVNIFGNLI 181          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: C71B8_ARATH (Cytochrome P450 71B8 OS=Arabidopsis thaliana GN=CYP71B8 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.959e-16
Identity = 45/130 (34.62%), Postives = 65/130 (50.00%), Query Frame = 3
Query:  156 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRALASA 545
            PPGP   PI+GNL  LG + H S   L+  HGP+M LR G              Q LK  D    +RP          N++DI F  YG  WR ++K+  + LF+ K    +R++R+EE  +L + L+ +
Sbjct:   31 PPGPTGLPIIGNLHQLGRLLHSSFHKLSLEHGPVMLLRFGVVPMVVISSKEAAKQVLKSRDLETCSRPKLVANGLFTRNFKDIAFAQYGEDWREMKKLVGLELFNPKKHKFFRYIREEEGDLLVKKLSKS 160          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: C71B6_ARATH (Cytochrome P450 71B6 OS=Arabidopsis thaliana GN=CYP71B6 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.959e-16
Identity = 51/158 (32.28%), Postives = 83/158 (52.53%), Query Frame = 3
Query:  156 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRAL---ASAGTEPVNLAQRLNLCVVNALGRVMLG 620
            PPGP   PI+GN+  LG +PH+S+  L+  +GP++ + LG              + LK+HDS    RP  S  K   Y+   + F  +G  +R +RK+  + LFS K  + +R++R+EE++ L  +    AS+G+  V+L   L   V +   R+  G
Sbjct:   37 PPGPPRLPILGNIHQLGSLPHRSLRDLSLKYGPVITVYLGSVRTVVVHSPETAEEVLKLHDSECCTRPKLSITKSFFYDGLGLGFTKWGDYYRDVRKLCVLELFSVKRANSFRNIREEELSRLVNSFSDSASSGSS-VDLTANLAKFVASFTCRMAFG 193          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: C71BO_ARATH (Cytochrome P450 71B24 OS=Arabidopsis thaliana GN=CYP71B24 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15
Identity = 47/143 (32.87%), Postives = 74/143 (51.75%), Query Frame = 3
Query:  156 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRALASAGTE--PVNLAQRL 578
            PP P   P++GNL  L  + H+ +  L++ HGP++ LRLGF             + LK+HD     RP  +    +  + QDI   PYG   R LRK+S +  FS   +  +R++R+EE  ++ + L  A  +   V+L+Q L
Sbjct:   27 PPSPLKLPVIGNLYQLRGLFHKCLHDLSKKHGPVLLLRLGFLDMVVISSTEAAEEALKVHDLECCTRPITNVTSKLWRDGQDIGLAPYGESLRELRKLSFLKFFSTTKVRSFRYIREEENDLMVKKLKEAALKKSSVDLSQTL 169          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: C71C4_MAIZE (Cytochrome P450 71C4 OS=Zea mays GN=CYP71C4 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15
Identity = 55/158 (34.81%), Postives = 82/158 (51.90%), Query Frame = 3
Query:  156 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGP-LMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEM-AVLTRA-LASAGTEPVNLAQRLNLCVVNALGRVMLG 620
            P  P   PI+G+L  +G +P+ S+A LA  +GP LM LRLG                L+ +D  FS+RP +  +  I Y   D  F PYG  +R  RK+ +VHL +   +   R  R+EE+   L R   A+A  EPV++++ L+  V N + R + G
Sbjct:   69 PSPPMKLPIIGHLHLMGDIPYVSLAALATRYGPDLMLLRLGAVPTVVVSSPRVAEAVLRTYDHVFSSRPRSLVSDIIMYGATDSCFAPYGDHFRKARKLVTVHLLNASKVRSQRPAREEEVRGALDRVRRAAAAREPVDMSELLHSFVNNLVCRAVSG 226          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: C76C2_ARATH (Cytochrome P450 76C2 OS=Arabidopsis thaliana GN=CYP76C2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.996e-15
Identity = 44/156 (28.21%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  156 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVF-RPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRAL--ASAGTEPVNLAQRLNLCVVNALGRVM 614
            PPGP   PI+GN+  +G  PH S A L++T+GP+M L+ G              + L+ +D   S+R P +  + I ++   +V+  P   RWR+LRK+S+  LFS + ++  + +R+ ++  L   +  +S   E V++++   +  +N +  ++
Sbjct:   39 PPGPPRLPIIGNIHLVGRNPHHSFADLSKTYGPIMSLKFGSLNTVVVTSPEAAREVLRTYDQILSSRTPTNSIRSINHDKVSVVWLPPSSSRWRLLRKLSATQLFSPQRIEATKTLRENKVKELVSFMSESSEREEAVDISRATFITALNIISNIL 194          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: C99A3_ORYSJ (Cytochrome P450 99A3 OS=Oryza sativa subsp. japonica GN=CYP99A3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.607e-15
Identity = 53/158 (33.54%), Postives = 73/158 (46.20%), Query Frame = 3
Query:  156 PPGPKPWPIVGNLPHL-GPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRAL--ASAGTEPVNLAQRLNLCVVNALGRVMLG 620
            PPGP   P+VG L HL    P  ++  LA  +GP+M+LR G              + L+  D  F++RP    ++   Y   DI F PYG  WRMLRK+ +V L S K +     +R  E   L R +  A+ G +P  LA  L  C      +   G
Sbjct:   36 PPGPWNLPLVGGLLHLLRSQPQVALRDLAGKYGPVMFLRTGQVDTVVISSPAAAQEVLRDKDVTFASRPSLLVSEIFCYGNLDIGFAPYGAYWRMLRKLCTVELLSTKMVRQLAPIRDGETLALVRNIEAAAGGKKPFTLATLLISCTNTFTAKAAFG 193          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: C98A2_SOYBN (Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.607e-15
Identity = 41/143 (28.67%), Postives = 78/143 (54.55%), Query Frame = 3
Query:  156 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRALASAGTEPVNLAQRLNL 584
            PPGP+PWP+VGNL  + P+  +  A  A+++GP++ +  G              + LK HD   ++R  +  A   + + +D+++  YGP +  +RK+ ++ LFS K L+  R +R++E+  +  ++ +  T   NL + + L
Sbjct:   29 PPGPRPWPVVGNLYDIKPVRFRCFAEWAQSYGPIISVWFGSTLNVIVSNSELAKEVLKEHDQLLADRHRSRSAAKFSRDGKDLIWADYGPHYVKVRKVCTLELFSPKRLEALRPIREDEVTSMVDSVYNHCTSTENLGKGILL 171          
The following BLAST results are available for this feature:
BLAST of FC876404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
C99A2_ORYSJ1.805e-1632.93Cytochrome P450 99A2 OS=Oryza sativa subsp. japoni... [more]
C80B2_ESCCA2.358e-1631.37(S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS... [more]
C80B1_ESCCA2.358e-1631.37(S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (F... [more]
C71B8_ARATH8.959e-1634.62Cytochrome P450 71B8 OS=Arabidopsis thaliana GN=CY... [more]
C71B6_ARATH8.959e-1632.28Cytochrome P450 71B6 OS=Arabidopsis thaliana GN=CY... [more]
C71BO_ARATH1.170e-1532.87Cytochrome P450 71B24 OS=Arabidopsis thaliana GN=C... [more]
C71C4_MAIZE1.528e-1534.81Cytochrome P450 71C4 OS=Zea mays GN=CYP71C4 PE=2 S... [more]
C76C2_ARATH1.996e-1528.21Cytochrome P450 76C2 OS=Arabidopsis thaliana GN=CY... [more]
C99A3_ORYSJ2.607e-1533.54Cytochrome P450 99A3 OS=Oryza sativa subsp. japoni... [more]
C98A2_SOYBN2.607e-1528.67Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004D03EF DevOvary1 Citrus clementina cDNA clone C32004D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876404 ID=FC876404; Name=FC876404; organism=Citrus clementina; type=EST; length=622bp
GACTCGTACCATTTCTACACTTTCTCTGGGAAACGAAACAAAGAGCAATG
TCTACTTTACCACTACTGATACTGTACACATCACTTTTGGCAATTGTCAT
TTCTTTCCTTTTTAGCCTCCTCCGGAACAGACGCAGACACTCCTCCCACC
GTCTGCCTCCCGGTCCGAAACCCTGGCCAATAGTCGGAAACCTCCCTCAC
TTGGGCCCTATGCCCCACCAATCCATAGCGGGTCTGGCCCGAACCCACGG
CCCCCTCATGTACCTCCGGTTAGGCTTCGTTGACGTCGTCGTGGCCGCTT
CCGCATCCGTGGCGGCCCAATTCCTGAAGATCCATGATTCCAACTTCTCC
AACCGCCCTCCCAACTCCGGCGCCAAGCACATCGCTTACAACTATCAGGA
CATCGTTTTCCGGCCGTACGGCCCCCGCTGGCGGATGCTGAGGAAGATCA
GCTCCGTTCATCTTTTCTCCGGCAAGGCCTTGGATGACTACAGGCACGTT
CGCCAGGAAGAGATGGCGGTGCTCACGCGCGCGTTGGCGAGTGCAGGAAC
GGAGCCGGTGAACTTAGCTCAACGGTTGAACTTGTGCGTTGTGAATGCCC
TAGGGCGGGTGATGCTAGGCTT
back to top