FC876405

Overview
NameFC876405
Unique NameFC876405
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10228 contig Ccv1_Contig10228:43..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.353e-34
Identity = 73/140 (52.14%), Postives = 91/140 (65.00%), Query Frame = 3
Query:  285 ATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFA-FKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            A +A  ++ A   G    LT+DEIQ  TY++VKG+G AN CP ++ G  +    K G Y+ + FC+EPTSFTVK E   K    +F  TKLMTRLTYTLD + G F+V  DG+ +  E DGIDYAA TVQL GGERV FL
Sbjct:   34 AAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGIDYAATTVQLPGGERVAFL 173          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.829e-32
Identity = 75/147 (51.02%), Postives = 91/147 (61.90%), Query Frame = 3
Query:  267 IAGFALATSALVVSGASAEGV-PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDS-FAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            +AG   A  A ++  A A       LTYDE+QS +Y+EVK +G A  CP +  GV S  + K GKY+   +CLEP+SF VK     K    +F+ TKLMTRLTYTLD I     V  DG+    EKDG+DYAA TVQLAGGERVPFL
Sbjct:   71 LAGAGRAMGAALIGAAVAGSANAASLTYDELQSLSYLEVKSSGIAGTCPVLADGVSSKLSLKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGLDYAATTVQLAGGERVPFL 217          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.097e-24
Identity = 55/117 (47.01%), Postives = 80/117 (68.38%), Query Frame = 3
Query:  357 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P L
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLL 145          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.097e-24
Identity = 55/117 (47.01%), Postives = 80/117 (68.38%), Query Frame = 3
Query:  357 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+AGGER+P L
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLL 145          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.515e-23
Identity = 55/116 (47.41%), Postives = 75/116 (64.66%), Query Frame = 3
Query:  366 TYMEVKGTGTANQCP----TIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            TY +++GTG AN+CP    T  G +   + K   Y  K+ CLEPT+F VK E  NK    +F   KL+TR T T+D++ G  + + D ++ FVEKDG+D+ A+TVQL GGERVPFL
Sbjct:   34 TYEQIRGTGLANKCPQLTETSRGSIPLDSSK--SYVLKELCLEPTNFFVKEEPANKRQTAEFVAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDFQAITVQLPGGERVPFL 147          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.955e-19
Identity = 52/116 (44.83%), Postives = 67/116 (57.76%), Query Frame = 3
Query:  357 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPF 698
            Q  TY E+  TG AN+CP I      S   +PG+ Y     CLEP  + VK E VNK    ++   KL+TR T +L++I G   V  DG + F E+ GID+  VTVQL GGE+VPF
Sbjct:   32 QDLTYDEILNTGLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQEAEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDFQPVTVQLPGGEQVPF 147          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 49/113 (43.36%), Postives = 65/113 (57.52%), Query Frame = 3
Query:  366 TYMEVKGTGTANQCPTIDGGV-DSFAFKPG-KYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPF 698
            TY ++  TG AN CP I      +   +P  KY    FC+EP  + VK E VNK    ++   K++TR T +L++I G   V  DGT+ F EKDGID+  +TV L GGE VPF
Sbjct:   35 TYDDIVNTGLANVCPEISSFTRGTIEVEPNTKYFVSDFCMEPQEYFVKEEPVNKRQKAEYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDFQPITVLLPGGEEVPF 147          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.503e-18
Identity = 50/122 (40.98%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  342 TYDEIQSKTYMEVKGTGTANQCPTI-DGGVDSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            T  ++ + TY ++K TG AN+C ++ +    +   + GK Y     CLEP  F VK E  NK    +F   K++TR T +LD++ G   +  DGT+ F EK GID+ A+TV L GGE VPFL
Sbjct:   26 TAADLGTLTYDQIKDTGLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPGNKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDFQAITVLLPGGEEVPFL 147          
BLAST of FC876405 vs. ExPASy Swiss-Prot
Match: PSBO_POPEU (Oxygen-evolving enhancer protein 1, chloroplastic (Fragments) OS=Populus euphratica GN=PSBO PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 38/67 (56.72%), Postives = 40/67 (59.70%), Query Frame = 3
Query:  501 KAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLAGGERVPFL 701
            KAEG+NKN+PPDFQ TKLMTR                         DGIDYAAVTVQL GGERVPFL
Sbjct:   10 KAEGINKNSPPDFQKTKLMTR-------------------------DGIDYAAVTVQLPGGERVPFL 51          
The following BLAST results are available for this feature:
BLAST of FC876405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSBO_CHLRE4.353e-3452.14Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR1.829e-3251.02Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_THEEB9.097e-2447.01Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN9.097e-2447.01Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_ANASP4.515e-2347.41Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA53.955e-1944.83Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY31.503e-1843.36Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE71.503e-1840.98Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_POPEU3.964e-1156.72Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC32004D04EF DevOvary1 Citrus clementina cDNA clone C32004D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876405 ID=FC876405; Name=FC876405; organism=Citrus clementina; type=EST; length=722bp
GGGTTTGTTTCTTAGAAGATAAAGGGATACTAGCAAGTAACCCACAAGTG
GTAGGGAGCAAGATGGCAGCCTCGTTACAAGCCGCAGCTACACTGATGCA
ACCCACCAAGGTGGGTGTGGTACCCGCTCGCAGCAGCAGCCTGCAGCTGA
GGTCTTCACAGAGCGTTTCGAAGGCTTTTGGTGTCGACTCAGCTGGTGCT
AGGATCTCTTGCTCTTTGAATAATGACTTGAAGGATTTGGCTCAGAAATG
TGTTGATGCTACCAAGATCGCTGGCTTTGCCCTCGCCACTTCTGCTCTCG
TCGTTTCGGGAGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAACCTATGAT
GAAATCCAGAGCAAGACATACATGGAAGTGAAGGGAACCGGAACTGCTAA
CCAGTGCCCAACCATTGATGGCGGAGTTGACTCTTTTGCCTTCAAACCTG
GCAAATACCAGGCTAAGAAGTTCTGCCTAGAACCAACTTCCTTCACTGTC
AAGGCTGAGGGTGTCAACAAGAATGCCCCACCAGATTTCCAGAACACCAA
GCTCATGACCCGCCTTACCTACACCCTTGACGAGATTGAGGGACCTTTTG
AAGTGTCCCCCGATGGCACCATTAAGTTTGTGGAGAAGGATGGAATTGAC
TATGCTGCTGTGACAGTTCAGCTGGCTGGAGGCGAGCGTGTGCCCTTCCT
TTCACATCAAACATTGGTAGCA
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