FC876406

Overview
NameFC876406
Unique NameFC876406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B7_CHICK (Histone H2B 7 OS=Gallus gallus GN=H2B-VII PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.598e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IY++KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B12_XENLA (Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.598e-36
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IY++KV+KQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYAIYVYKVMKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B_SIPNU (Histone H2B OS=Sipunculus nudus GN=H2B PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YN++ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNRRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B1N_BOVIN (Histone H2B type 1-N OS=Bos taurus GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.726e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y +Y++KVLKQVHPD GISSKAMG MNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGNMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B1K_MACFA (Histone H2B type 1-K OS=Macaca fascicularis GN=HIST1H2BK PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.726e-36
Identity = 73/90 (81.11%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y +Y++KVLK+VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKRVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B_ASTPE (Histone H2B OS=Asterina pectinifera PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.561e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IYI+KV+KQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   32 ESYGIYIYKVMKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 121
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2BFS_HUMAN (Histone H2B type F-S OS=Homo sapiens GN=H2BFS PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.561e-36
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRL  YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLPHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B1A_MOUSE (Histone H2B type 1-A OS=Mus musculus GN=Hist1h2ba PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 3.561e-36
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+ DIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   37 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 126
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B_RHASC (Histone H2B OS=Rhacophorus schlegelii GN=histh2b PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.650e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IY++KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B_ACRFO (Histone H2B OS=Acropora formosa PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.650e-36
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IYI+KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRL+ YNKK TI+SREIQTA+RL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   35 ESYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAIRLLLPGELAKHAVSEGTKAVTKYTSS 124
The following BLAST results are available for this feature:
BLAST of FC876406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B7_CHICK1.598e-3683.33Histone H2B 7 OS=Gallus gallus GN=H2B-VII PE=1 SV=... [more]
H2B12_XENLA1.598e-3682.22Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2[more]
H2B_SIPNU2.087e-3683.33Histone H2B OS=Sipunculus nudus GN=H2B PE=1 SV=2[more]
H2B1N_BOVIN2.726e-3682.22Histone H2B type 1-N OS=Bos taurus GN=HIST1H2BN PE... [more]
H2B1K_MACFA2.726e-3681.11Histone H2B type 1-K OS=Macaca fascicularis GN=HIS... [more]
H2B_ASTPE3.561e-3682.22Histone H2B OS=Asterina pectinifera PE=1 SV=2[more]
H2BFS_HUMAN3.561e-3681.11Histone H2B type F-S OS=Homo sapiens GN=H2BFS PE=1... [more]
H2B1A_MOUSE3.561e-3683.33Histone H2B type 1-A OS=Mus musculus GN=Hist1h2ba ... [more]
H2B_RHASC4.650e-3682.22Histone H2B OS=Rhacophorus schlegelii GN=histh2b P... [more]
H2B_ACRFO4.650e-3682.22Histone H2B OS=Acropora formosa PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32004D05EF DevOvary1 Citrus clementina cDNA clone C32004D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876406 ID=FC876406; Name=FC876406; organism=Citrus clementina; type=EST; length=724bp
GGAAACGCCTAGCTTTACTCTTACCGTTTCGAAGTAAAAGGAAAAGAAAA
TATCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGC
ACCAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGA
AGACATCGGTGGCCGAGAAGGCGCCGGCAGAGAAGAAGCCGAAGGCCGGC
AAGAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGC
GAAGAAGAGCATCGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGC
AGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAAC
AGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCT
TGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCG
CTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAG
GGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGC
ATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAG
GCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAATC
TTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCTGA
TCCAGGTGATGTGCATGTTCATTA
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