FC876406

Overview
NameFC876406
Unique NameFC876406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B1_RAT (Histone H2B type 1 OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.145e-34
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E  RLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGER-RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 124
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2BE1_PSAMI (Histone H2B.1, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.496e-34
Identity = 71/90 (78.89%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IYI+KVLKQVHPD G+SS+AM IMNSF+NDIFE++A EASRL +YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T++
Sbjct:   33 ESYGIYIYKVLKQVHPDTGVSSRAMTIMNSFVNDIFERIAGEASRLTQYNKKSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTA 122
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B_EUPCR (Histone H2B OS=Euplotes crassus GN=H2B1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.954e-34
Identity = 69/90 (76.67%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            ET+ +YI++VLKQVHP+ G+S K+M IMNSFINDIFEK+A EAS+L RYNKK T++SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   24 ETFSVYIYRVLKQVHPETGVSKKSMSIMNSFINDIFEKIALEASKLVRYNKKHTLSSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 113
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B_GIBZE (Histone H2B OS=Gibberella zeae GN=HTB1 PE=3 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.552e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVASEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B_ROSNE (Histone H2B OS=Rosellinia necatrix GN=hh2b PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.333e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   45 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 134
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B_PODAN (Histone H2B OS=Podospora anserina GN=HTB1 PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.333e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B_NEUCR (Histone H2B OS=Neurospora crassa GN=hh2b PE=1 SV=4)

HSP 1 Score: 145.206 bits (365), Expect = 3.333e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B_NEOFI (Histone H2B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=htb1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.333e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   49 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B_MAGGR (Histone H2B OS=Magnaporthe grisea GN=HTB1 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.333e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B_EMENI (Histone H2B OS=Emericella nidulans GN=htbA PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.333e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   49 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138
The following BLAST results are available for this feature:
BLAST of FC876406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1_RAT1.145e-3481.11Histone H2B type 1 OS=Rattus norvegicus PE=1 SV=2[more]
H2BE1_PSAMI1.496e-3478.89Histone H2B.1, embryonic OS=Psammechinus miliaris ... [more]
H2B_EUPCR1.954e-3476.67Histone H2B OS=Euplotes crassus GN=H2B1 PE=3 SV=1[more]
H2B_GIBZE2.552e-3477.78Histone H2B OS=Gibberella zeae GN=HTB1 PE=3 SV=3[more]
H2B_ROSNE3.333e-3477.78Histone H2B OS=Rosellinia necatrix GN=hh2b PE=3 SV... [more]
H2B_PODAN3.333e-3477.78Histone H2B OS=Podospora anserina GN=HTB1 PE=3 SV=... [more]
H2B_NEUCR3.333e-3477.78Histone H2B OS=Neurospora crassa GN=hh2b PE=1 SV=4[more]
H2B_NEOFI3.333e-3477.78Histone H2B OS=Neosartorya fischeri (strain ATCC 1... [more]
H2B_MAGGR3.333e-3477.78Histone H2B OS=Magnaporthe grisea GN=HTB1 PE=2 SV=... [more]
H2B_EMENI3.333e-3477.78Histone H2B OS=Emericella nidulans GN=htbA PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32004D05EF DevOvary1 Citrus clementina cDNA clone C32004D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876406 ID=FC876406; Name=FC876406; organism=Citrus clementina; type=EST; length=724bp
GGAAACGCCTAGCTTTACTCTTACCGTTTCGAAGTAAAAGGAAAAGAAAA
TATCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGC
ACCAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGA
AGACATCGGTGGCCGAGAAGGCGCCGGCAGAGAAGAAGCCGAAGGCCGGC
AAGAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGC
GAAGAAGAGCATCGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGC
AGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAAC
AGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCT
TGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCG
CTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAG
GGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGC
ATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAG
GCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAATC
TTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCTGA
TCCAGGTGATGTGCATGTTCATTA
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